Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E04_e509_10.seq
         (1534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17810.1 68416.m02271 dihydroorotate dehydrogenase family pro...   172   4e-43
At5g67220.1 68418.m08473 nitrogen regulation family protein simi...    35   0.12 
At5g38560.1 68418.m04662 protein kinase family protein contains ...    31   2.0  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    31   2.7  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    31   2.7  
At5g24950.1 68418.m02954 cytochrome P450 71A15, putative (CYP71A...    29   6.2  

>At3g17810.1 68416.m02271 dihydroorotate dehydrogenase family protein
            / dihydroorotate oxidase family protein low similarity to
            SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+]
            precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil
            dehydrogenase) (Dihydrothymine dehydrogenase) {Homo
            sapiens}; contains Pfam profile PF01180: Dihydroorotate
            dehydrogenase
          Length = 426

 Score =  172 bits (419), Expect = 4e-43
 Identities = 108/325 (33%), Positives = 158/325 (48%), Gaps = 10/325 (3%)
 Frame = +2

Query: 50   PPGCXXXXXXXXXXEQGWGFAVTKTFSLDKDMVTNVSPRIVRGVTSGENYGPGQGSFL-- 223
            PPG           ++GWG  + KT SLD   V NV+PR  R + +G N G  +   +  
Sbjct: 71   PPG-TNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYAR-LRTGSN-GSAKTDVIGW 127

Query: 224  -NIELISEKCEAYWCQSVTELKKDFPNKVIIASIMCSYNEEDWTLLSKKAEAAGADALEL 400
             NIELIS++      +    LKK++P++++IAS+M  YN+  W  L  + E  G DALE+
Sbjct: 128  QNIELISDRPLETMLKEFERLKKEYPDRILIASVMEEYNKTAWEELIDRVEQTGVDALEI 187

Query: 401  NLSCPHGMGESGMGLACGQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYEG 580
            N SCPHGM E  MG A GQD  L+  +  W+     +P + K+TPNITDI   A  + + 
Sbjct: 188  NFSCPHGMPERRMGAAVGQDCALLDEVCGWINAKATVPVWAKMTPNITDITEPARVSLKS 247

Query: 581  GASGVSAINTVSGLMSIRADG-TPWPAVGREKHTTYGGLSGNATRPMGLRAVSAIGNRXX 757
            G  G++AINT+  +M I      P P V  E ++T GG S  A RP+ L  V  I     
Sbjct: 248  GCEGIAAINTIMSVMGIDMKTLRPEPCV--EGYSTPGGYSYKAVRPIALAKVMNIAKMMK 305

Query: 758  XXXXXXXXXX-----DSAESALQFIMCGAPVVQICSAVQNQDFTVVDDYITGLKAPV-VH 919
                           ++   A +FI+ G+  VQ+C+ V    +  V      LK  +  H
Sbjct: 306  SEFSEDRSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQH 365

Query: 920  SFXGLTDGRDSXPPGFXPXXETLSR 994
            +F  + + R      F    + + R
Sbjct: 366  NFSTIEEFRGHSLQYFTTHTDLVKR 390


>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
           to unknown protein (gb|AAF51525.1) ; contains Pfam
           domain PF01207: Dihydrouridine synthase (Dus); similar
           to (SP:P45672) NIFR3-like protein (SP:P45672)
           [Azospirillum brasilense]
          Length = 423

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
 Frame = +2

Query: 236 ISEKCEAYWCQSVTELKKDFPNKVIIASIMCSYNEEDWTLLSKKAEAAGADALELNLSCP 415
           I  + E Y  Q  T  K+D P  V   +     N+ D  L + K      D +++NL CP
Sbjct: 124 IFTETEKYRNQEFTTCKEDRPLFVQFCA-----NDPDTLLEAAKRVEPYCDYVDINLGCP 178

Query: 416 HGMGESG-MGLACGQDPVLVKGISQWVRKAIKIPFF--VKLTPNITDIVSIAVAAYEGGA 586
             +   G  G     +  LVK + + + + + +P    +++ PN+ D +  A    + G 
Sbjct: 179 QRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGC 238

Query: 587 S 589
           S
Sbjct: 239 S 239


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 24/87 (27%), Positives = 34/87 (39%)
 Frame = -2

Query: 837 TTGAPHIINCSADSAESIPPIPRIGKPGSLLPIAETARSPIGRVALPDSPPYVVCFSRPT 658
           T  AP  +       +S PP+     P  ++     + SP      P SPP V+    PT
Sbjct: 31  TPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPPSSSP------PPSPP-VITSPPPT 83

Query: 657 AGHGVPSALIDINPDTVFIADTPLAPP 577
                P  ++  +P     A TP APP
Sbjct: 84  VASSPPPPVVIASPPPSTPATTPPAPP 110


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 1372 SXIFFXKXGPPPXXXXXGNAXPXXKPPPPGXFXXXPPXXXXQPNP 1506
            S + F +  PPP         P   PPPP  +   PP     P P
Sbjct: 485  SPVKFRRSPPPPPVHSPPPPSPIHSPPPPPVYSPPPPPPVYSPPP 529


>At1g59910.1 68414.m06749 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02128
          Length = 929

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = +1

Query: 1399 PPPXXXXXGNAX-PXXKPPPPGXF-XXXPPXXXXQPNP 1506
            PPP     GNA  P   PPPPG +     P     P P
Sbjct: 265  PPPGQYMAGNASFPSSTPPPPGQYMAGNAPFSSSTPLP 302


>At5g24950.1 68418.m02954 cytochrome P450 71A15, putative (CYP71A15)
           identical to Cytochrome P450 71A15 (SP:P58046).
           [Arabidopsis thaliana]; cytochrome P-450LXXIA1 - Persea
           americana (avocado), EMBL:M32885
          Length = 496

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 257 YWCQSVTELKKDFPNKVIIASIMCSYNEEDWTLLSKKAEAAGADALELNLS 409
           YW Q  T       NK ++ S      EE+ +++ +K E A +D+  LNLS
Sbjct: 123 YWRQIKTVCVVHLLNKKMVQSF-AKVREEERSVMMEKVEKASSDSSPLNLS 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,036,129
Number of Sequences: 28952
Number of extensions: 595626
Number of successful extensions: 2250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4106040192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)