Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E03_e501_09.seq
         (1519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...    74   3e-13
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    66   5e-11
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           34   0.26 

>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score = 74.1 bits (174), Expect = 3e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILDXCYTGIM-GRSKKXXYL 379
           LNVH VPHTHDDVGWLKTVDQYY GSNN IQ   V ++LD     ++   ++K  Y+
Sbjct: 41  LNVHVVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLVPALLKDENRKFVYV 97


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 66.5 bits (155), Expect = 5e-11
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILD 331
           LNVH VPH+HDDVGWLKT+DQY+ G+NN IQ   V + LD
Sbjct: 38  LNVHLVPHSHDDVGWLKTIDQYFVGTNNSIQGACVMNTLD 77


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 34.3 bits (75), Expect = 0.26
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYY 280
           L V   PH+H+D GW  TV++YY
Sbjct: 166 LKVFVAPHSHNDPGWRLTVEEYY 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,730
Number of Sequences: 37544
Number of extensions: 205526
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)