Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E03_e501_09.seq
         (1519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             72   1e-12
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              72   1e-12

>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILD 331
           L +H VPHTHDDVGWLKTVD+Y+YG+NN IQ  GV  ILD
Sbjct: 40  LQIHIVPHTHDDVGWLKTVDEYFYGANNSIQHAGVQYILD 79


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILD 331
           L +H VPHTHDDVGWLKTVD+Y+YG+NN IQ  GV  ILD
Sbjct: 40  LQIHIVPHTHDDVGWLKTVDEYFYGANNSIQHAGVQYILD 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,214,306
Number of Sequences: 59808
Number of extensions: 245387
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)