Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E03_e501_09.seq
         (1519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    58   2e-08
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    33   0.53 
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    33   0.53 
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    32   0.93 

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +2

Query: 161 AGEACGXESCPDTPKD--VLNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGV 316
           + + C   +C    +D  V+  H +PHTHDD+GW+KTVDQY++G+   +   GV
Sbjct: 17  SSQDCAWNTCHKVDQDPNVITAHLIPHTHDDLGWIKTVDQYFWGAKPELVPVGV 70


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYY 280
           L V  +PH+H D GW+ T ++YY
Sbjct: 181 LEVIVIPHSHCDPGWIMTFEEYY 203


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYY 280
           L V  +PH+H D GW+ T ++YY
Sbjct: 179 LEVIVIPHSHCDPGWIMTFEEYY 201


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXI 301
           L V+ +P TH D GWL+T ++Y   +N  +
Sbjct: 137 LKVYVLPFTHVDPGWLETFERYTKSTNQIL 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,770,997
Number of Sequences: 27780
Number of extensions: 174357
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)