Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E03_e501_09.seq
         (1519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si...    74   3e-13
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si...    74   3e-13
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    72   9e-13
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    71   2e-12
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    38   0.017

>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 1024

 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILDXCYTGIMG-RSKKXXYL 379
           LNVH VPH+HDDVGWLKTVDQYY GSNN IQ   V ++LD     ++  +++K  Y+
Sbjct: 37  LNVHVVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSIVPALLADKNRKFIYV 93


>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 921

 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILDXCYTGIMG-RSKKXXYL 379
           LNVH VPH+HDDVGWLKTVDQYY GSNN IQ   V ++LD     ++  +++K  Y+
Sbjct: 37  LNVHVVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSIVPALLADKNRKFIYV 93


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase SP:O09159 from
           [Mus musculus]
          Length = 1047

 Score = 72.1 bits (169), Expect = 9e-13
 Identities = 30/47 (63%), Positives = 35/47 (74%)
 Frame = +2

Query: 212 LNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILDXCYTGIM 352
           LNVH VPH+HDDVGWLKTVDQYY GSNN IQ   V ++LD     ++
Sbjct: 47  LNVHLVPHSHDDVGWLKTVDQYYVGSNNRIQNACVRNVLDSVVDSLL 93


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
 Frame = +2

Query: 191 PDTPKDVLNVHXVPHTHDDVGWLKTVDQYYYGSNNXIQKXGVXDILDXCYTGIM-GRSKK 367
           P    + +NVH VPH+HDDVGWLKTVDQYY GSNN I+   V ++LD     ++   ++K
Sbjct: 31  PRIVPEKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRGACVQNVLDSVIASLLDDENRK 90

Query: 368 XXYL 379
             Y+
Sbjct: 91  FIYV 94


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 37.9 bits (84), Expect = 0.017
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 203 KDVLNVHXVPHTHDDVGWLKTVDQYYYGSNNXI 301
           K+ L +  VPH+H+D GW  TV++YY   +  I
Sbjct: 150 KEKLKIFVVPHSHNDPGWKLTVEEYYQRQSRHI 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,291
Number of Sequences: 28952
Number of extensions: 164633
Number of successful extensions: 271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)