Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E02_e493_10.seq
         (1585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   1.3  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   9.4  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = +1

Query: 214  VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDNGEGGFWVSYEDP 390
            V  L+SYP++  ++   + +    +LR++N P +  F  +A   P    E GF+V   D 
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873

Query: 391  DT----AGNKASYVKTKNLGGVSI-MDLSMD 468
            +T    A  +AS+   +N   + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 507 DRIFISSAKTTKIIHGKVHDGHTAKVLCFHVTSF 406
           D +F +    T ++H K   G T  V+C ++ +F
Sbjct: 114 DALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAF 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,882,781
Number of Sequences: 5004
Number of extensions: 72954
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 893960474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)