Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_E02_e493_10.seq
(1585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 7e-11
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 54 2e-07
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 53 6e-07
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 4e-05
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 47 4e-05
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 29 7.8
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 66.1 bits (154), Expect = 7e-11
Identities = 47/146 (32%), Positives = 71/146 (48%)
Frame = +1
Query: 85 PTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINP 264
P++K+ LGI GR++ L + ++ P A +GG+ GPYTK G ++Y EIC
Sbjct: 251 PSNKIALGIPLYGRSFTLKTANKTLDAP---ATKGGQ-GPYTKEAGYIAYFEIC------ 300
Query: 265 NQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGV 444
+ L DP Y D N + WV Y+D + K +Y+K K+L G
Sbjct: 301 -----KMGLSVTRDPVL-VSPYGV---DVNNQ---WVGYDDVTSVQEKVNYIKKKSLLGA 348
Query: 445 SIMDLSMDDFRGLCTGDKYPILRAAK 522
+ +DDF+G C YP++ A K
Sbjct: 349 MFWAMDLDDFKGDCGQGSYPLMTAVK 374
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 54.4 bits (125), Expect = 2e-07
Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +1
Query: 70 IRHEAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICA 249
IR+ P +K+VLG+ T GR + L+S + G +AG YT +G L+Y EIC
Sbjct: 645 IRNGMPANKIVLGLGTYGRAFGLESAG----------NNGLDAGKYTGAKGFLAYFEICK 694
Query: 250 KLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTK 429
+ +N K Y ++ G WV +++P + K V K
Sbjct: 695 MGLTVVENNKAK------------APYGYK-------GHDWVGFDNPKSLIYKIDNVVKK 735
Query: 430 N-LGGVSIMDLSMDDFRG-LCTGDKYPILRAAK 522
N L GV + +DDF G C KYP++ A K
Sbjct: 736 NQLRGVMFWAIDLDDFSGEHCGQGKYPLMSAVK 768
Score = 47.2 bits (107), Expect = 4e-05
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 187 GGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGG 366
G +G YT +G L+Y EIC + + H K N P Y ++ G
Sbjct: 277 GVHSGKYTDAEGFLAYYEICKRGLTV------VHKNKANAP------YGYK-------GK 317
Query: 367 FWVSYEDPDTAGNKASYVKTKN-LGGVSIMDLSMDDFRG-LCTGDKYPILRAAK 522
W+ ++DP++ K V KN L GV + +DDF G C KYP++ A K
Sbjct: 318 DWIGFDDPNSLVYKIDNVVKKNQLRGVMFWAIDLDDFSGEHCGQGKYPLMSAVK 371
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 53.2 bits (122), Expect = 6e-07
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Frame = +1
Query: 82 APTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLIN 261
AP K+ LG+ T GR +KL + P A+ G YT+ G L+Y EIC
Sbjct: 363 APASKIALGLGTYGRAFKLADQTRHGLKAP--ANGNPTRGQYTREPGFLAYYEIC----- 415
Query: 262 PNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYV-KTKNLG 438
K+N + A + P + G WV Y+D + K V K K +
Sbjct: 416 -----------KMNLQVTSTESSAVKAPYGH-VGDLWVGYDDEYSLSLKVERVIKAKGMA 463
Query: 439 GVSIMDLSMDDFRG-LCTGDKYPILRAAK 522
G + +DDF+G C YP++ A K
Sbjct: 464 GAMFWAIPLDDFKGQFCGKGPYPLINAVK 492
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 47.2 bits (107), Expect = 4e-05
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 361 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYPILRAAKYRL 531
G W++Y+D + G K +K +NL G + +DDF +C +P++ A +Y L
Sbjct: 696 GSQWIAYDDVTSLGRKVELIKKENLLGAMFWAIDLDDFGNVCGQGAHPLMGAVRYML 752
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 47.2 bits (107), Expect = 4e-05
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 199 GPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVS 378
GPYT+ G LSY EIC + P + +V P Y + D WV
Sbjct: 16 GPYTRESGFLSYYEICDMM--PKMKTMKTDQSEVRAP------YGYVKQD---WADVWVG 64
Query: 379 YEDPDTAGNKA-SYVKTKNLGGVSIMDLSMDDFRG-LCTGDKYPILRAAK 522
Y+D + K +K K L G L +DDF G C YP++ A K
Sbjct: 65 YDDERSLQLKVEEVIKAKGLAGAMFWALDLDDFDGSSCGKGNYPLMNAVK 114
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.3 bits (65), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 328 YAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSI 450
+ ++ PD + +G V+YEDP TA + K+ G SI
Sbjct: 208 WIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSI 248
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 414 TSFVSGRVRIFVRNPEATFTIIIRKAEGI 328
T + GR +IF+RNP F + ++ +G+
Sbjct: 640 TEYAYGRTKIFIRNPRTLFALEEKRKDGM 668
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,510,841
Number of Sequences: 59808
Number of extensions: 565259
Number of successful extensions: 1331
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5188097434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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