Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E02_e493_10.seq
         (1585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    31   1.6  
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr...    30   3.7  
At3g16460.2 68416.m02097 jacalin lectin family protein contains ...    30   3.7  
At3g16460.1 68416.m02098 jacalin lectin family protein contains ...    30   3.7  
At5g67640.1 68418.m08528 expressed protein  ; expression support...    29   6.4  

>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 35/140 (25%), Positives = 53/140 (37%)
 Frame = +1

Query: 85  PTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINP 264
           P  K VLG    G  W L +D +++G       +    GP     G +SY ++   +++ 
Sbjct: 226 PAKKAVLGFPYYGWAWTL-ADPDVNGY------DANTTGPAISDDGEISYRQLQTWIVD- 277

Query: 265 NQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGV 444
             NG      KV+D     G Y +        G  W+ Y+   +   K  Y K K L G 
Sbjct: 278 --NGAT----KVHD-DMMVGDYCYA-------GTTWIGYDSEKSIVTKVIYAKQKGLLGY 323

Query: 445 SIMDLSMDDFRGLCTGDKYP 504
               +  DD   L +    P
Sbjct: 324 FSWHVGGDDNSELSSAGSTP 343


>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
           protein bHLH protein, Arabidopsis thaliana,
           PATCHX:E255557
          Length = 589

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 301 NDPSKRFGTYAFRLPDDNGEG--GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDF 474
           N+    FG++AF L  D GE   G W+S  +   +G  A+ V   N G  S  +      
Sbjct: 253 NNGGGEFGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPV-MNNGGNDSTSNSDSQPI 311

Query: 475 RGLCTG 492
             LC G
Sbjct: 312 SKLCNG 317


>At3g16460.2 68416.m02097 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase binding protein [Brassica napus]
           GI:1711296, GI:1655824, myrosinase-binding protein
           homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
           profile PF01419 jacalin-like lectin family
          Length = 647

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +1

Query: 106 GISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRP 285
           G ST G +W  D  S+  GV  I+A  GGE   Y K   +         L    Q+ + P
Sbjct: 259 GNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVLHGKQQSRQNP 316

Query: 286 HLRKVNDPSK 315
               +N P +
Sbjct: 317 REFVINHPDE 326


>At3g16460.1 68416.m02098 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase binding protein [Brassica napus]
           GI:1711296, GI:1655824, myrosinase-binding protein
           homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
           profile PF01419 jacalin-like lectin family
          Length = 705

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +1

Query: 106 GISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRP 285
           G ST G +W  D  S+  GV  I+A  GGE   Y K   +         L    Q+ + P
Sbjct: 259 GNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVLHGKQQSRQNP 316

Query: 286 HLRKVNDPSK 315
               +N P +
Sbjct: 317 REFVINHPDE 326


>At5g67640.1 68418.m08528 expressed protein  ; expression supported
           by MPSS
          Length = 201

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +1

Query: 70  IRHEAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICA 249
           ++ EA   K V+G        +   +  +      + +E    G   +V G +S   IC+
Sbjct: 91  LKEEAARRKKVIGPLLPTEMLQTHDERSVGDACGSNVEEEDSDGGEEEVDGSIS--NICS 148

Query: 250 KLINPNQNGKRPHLRKVNDPSKR 318
           +L+ PN   K+  L   ND +++
Sbjct: 149 QLVRPNAQEKKEGLIGDNDKTRK 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,779,816
Number of Sequences: 28952
Number of extensions: 400113
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4269896256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)