Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_E01_e485_09.seq
(1480 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 140 2e-32
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 140 2e-32
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 140 2e-32
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 140 2e-32
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 138 4e-32
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 136 2e-31
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 77 2e-13
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 48 9e-05
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 39 0.040
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 39 0.040
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 39 0.040
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 39 0.040
CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein. 33 2.0
CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein. 33 2.0
BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin typ... 33 2.0
AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein pr... 33 2.0
Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type ... 32 4.6
Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type ... 32 4.6
BC125129-1|AAI25130.1| 892|Homo sapiens zinc finger protein 512... 32 6.1
BC125128-1|AAI25129.1| 892|Homo sapiens zinc finger protein 512... 32 6.1
AL118506-12|CAC15498.3| 892|Homo sapiens RP4-591C20.6 protein. 32 6.1
AB033022-1|BAA86510.1| 851|Homo sapiens KIAA1196 protein protein. 32 6.1
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 84 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 263
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 264 KIAQNPFGT---KGASIPPP 314
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 84 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 263
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 264 KIAQNPFGT---KGASIPPP 314
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 84 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 263
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 264 KIAQNPFGT---KGASIPPP 314
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 84 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 263
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 264 KIAQNPFGT---KGASIPPP 314
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 138 bits (335), Expect = 4e-32
Identities = 63/90 (70%), Positives = 69/90 (76%), Gaps = 3/90 (3%)
Frame = +3
Query: 54 GCRXFGTRVKMPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLI 233
GCR F + ++YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LI
Sbjct: 12 GCRLFLFLSPLFRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLI 71
Query: 234 DATTAAFKAGKIAQNPFGT---KGASIPPP 314
D TTAAF+ GKI PF GA IPPP
Sbjct: 72 DKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 101
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 136 bits (329), Expect = 2e-31
Identities = 60/80 (75%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +3
Query: 84 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 263
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKH++N K YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 264 KIAQNPFGT---KGASIPPP 314
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 77.0 bits (181), Expect = 2e-13
Identities = 37/53 (69%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +3
Query: 165 RKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGT---KGASIPPP 314
RKHK+NVK YYQKWMEEQAQ LID TTAAF+ GKI PF GA IPPP
Sbjct: 4 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 48.0 bits (109), Expect = 9e-05
Identities = 25/39 (64%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +3
Query: 207 MEEQAQHLIDATTAAFKAGKIAQNPFGT---KGASIPPP 314
MEEQAQ LID TTAAF+ GKI PF GA IPPP
Sbjct: 1 MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 39
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.040
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 87 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 266
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.040
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 87 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 266
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.040
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 87 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 266
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.040
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 87 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 266
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 90 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 221
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 90 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 221
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin type 5
protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 90 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 221
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein
protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 90 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 221
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 32.3 bits (70), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 96 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEE 215
+C C L +S + +H G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 32.3 bits (70), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 96 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEE 215
+C C L +S + +H G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>BC125129-1|AAI25130.1| 892|Homo sapiens zinc finger protein 512B
protein.
Length = 892
Score = 31.9 bits (69), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 934 ALQHIPLSPAGVIAKRPAPIAXPTVAQPDGEWQ 1032
A + +P +P V + PAP+A P P+ +WQ
Sbjct: 469 ARKKVPAAPITVSKEAPAPVAHPAPGGPEEQWQ 501
>BC125128-1|AAI25129.1| 892|Homo sapiens zinc finger protein 512B
protein.
Length = 892
Score = 31.9 bits (69), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 934 ALQHIPLSPAGVIAKRPAPIAXPTVAQPDGEWQ 1032
A + +P +P V + PAP+A P P+ +WQ
Sbjct: 469 ARKKVPAAPITVSKEAPAPVAHPAPGGPEEQWQ 501
>AL118506-12|CAC15498.3| 892|Homo sapiens RP4-591C20.6 protein.
Length = 892
Score = 31.9 bits (69), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 934 ALQHIPLSPAGVIAKRPAPIAXPTVAQPDGEWQ 1032
A + +P +P V + PAP+A P P+ +WQ
Sbjct: 469 ARKKVPAAPITVSKEAPAPVAHPAPGGPEEQWQ 501
>AB033022-1|BAA86510.1| 851|Homo sapiens KIAA1196 protein protein.
Length = 851
Score = 31.9 bits (69), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 934 ALQHIPLSPAGVIAKRPAPIAXPTVAQPDGEWQ 1032
A + +P +P V + PAP+A P P+ +WQ
Sbjct: 428 ARKKVPAAPITVSKEAPAPVAHPAPGGPEEQWQ 460
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,247,296
Number of Sequences: 237096
Number of extensions: 3547578
Number of successful extensions: 9919
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9913
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21868844466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -