Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D12_e572_08.seq
         (1514 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.6  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 730 VKL*RPFRSTALARLKK--KVPALCLWQAISCYI 825
           +K   P +   L RL K  K P LC+   +SCY+
Sbjct: 203 IKTSGPHKFQPLLRLPKFKKKPLLCVVSTLSCYL 236


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 401 NVSGNRLATLFVEPMPDGAHGFSNS 327
           N  GN+LA L+    PD  + F N+
Sbjct: 352 NEQGNKLADLYKSLGPDSVYSFINN 376


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 401 NVSGNRLATLFVEPMPDGAHGFSNS 327
           N  GN+LA L+    PD  + F N+
Sbjct: 244 NEQGNKLADLYKSLGPDSVYSFINN 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,589
Number of Sequences: 336
Number of extensions: 6555
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45476700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)