Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D12_e572_08.seq
         (1514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    33   0.78 
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     31   2.4  
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549...    29   7.3  
05_03_0155 - 9002049-9002134,9002825-9004139                           29   9.6  

>06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,
            3251509-3252384,3252445-3252534,3252645-3252696,
            3253117-3253168,3253265-3253363,3253444-3253528,
            3253620-3253668,3253749-3253816,3254417-3254482,
            3255690-3255741,3256685-3256767,3256915-3256946,
            3257271-3257466,3258542-3258607,3259797-3259869,
            3260010-3260224
          Length = 967

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +1

Query: 202  PQRFPRPPVLRHPYPANSRDLHQVVGPPCGEPTHAASSSTRQL-LENPWAPSGIGSTNNV 378
            PQ  PRP + + P  A S  L     PP   P    S   ++L ++  W P+G    +  
Sbjct: 855  PQAVPRPTISQAPPRAQSPFLPATARPPSTPPPIGTSDDLQELPVDESWRPTGQMRGSLT 914

Query: 379  ASLLPLTFGNSPGNVGYLGSST 444
                 +  G    +V   G  T
Sbjct: 915  GEAYSVAIGRYNPSVNIAGQQT 936


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 156 NPSIH*TTSTAGHRSPPKISTTTG-LAPPVSSELPRPSPGRRSTLWGAYPR 305
           N +++   ++A H  PP  S  +G +APP +S L +P+P   + L  A  R
Sbjct: 94  NVALNRLPTSAPHSPPPSSSAPSGAVAPPFASSLIQPNPTLSNALVAALKR 144


>09_04_0613 +
           18953761-18953932,18954672-18954799,18954885-18954956,
           18955033-18955146,18955547-18955615,18955691-18955747,
           18956262-18956315,18956387-18956449,18956543-18956605,
           18956803-18956967,18957111-18957266,18957315-18957416
          Length = 404

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 285 RWTDDLVKVAGVRWIRVAQDRW-SWKSLGEIYVQQ 184
           +W +  V+ A  +WI V +++W + K+  E YVQ+
Sbjct: 253 KWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQK 287


>05_03_0155 - 9002049-9002134,9002825-9004139
          Length = 466

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 289 HKVDRRPGEGRGSSLDTGGARPVVVEIFGGD 197
           H VDRRPG   G+ +D  G    V+    GD
Sbjct: 89  HLVDRRPGPKPGTGIDVVGLLSAVIYATSGD 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,085,958
Number of Sequences: 37544
Number of extensions: 750350
Number of successful extensions: 2119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2112
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)