Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D12_e572_08.seq
         (1514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      31   1.8  
SB_14305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  

>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 120 IVHIIEQIMHITNPSIH*TTSTAGHRSPPKISTTTGLAPPVSSELPRPSPGRRSTLWGAY 299
           I+ II  ++  ++P    TT+T    + P +S +T  +PP S + P P P  R+T    +
Sbjct: 35  IISIIVVVVINSSPPPPPTTTT----TTPSLSLSTSTSPPFSYKSPDPWPNTRNTDITLH 90

Query: 300 PRCVFQYT 323
            +C   +T
Sbjct: 91  QKCETLFT 98


>SB_14305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 224 RSCATRIQRTPATFTRSSVHLVGSLPTLRLPVHGNY*RTHGPHRASVLRITWLAYYHLHL 403
           R+  T   R  A FT  ++ LVGSLP L + +      T  P  A V  +  L Y  ++ 
Sbjct: 134 RNALTLKGRFQAWFTTRNILLVGSLPYLGIVIISELLVTFAPSHAIVSFVCQLIYTVINF 193

Query: 404 AI 409
           A+
Sbjct: 194 AL 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,687,427
Number of Sequences: 59808
Number of extensions: 811074
Number of successful extensions: 2451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2446
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)