Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_D12_e572_08.seq
(1514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 60 5e-09
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 52 8e-07
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 52 8e-07
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 52 8e-07
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 52 1e-06
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 33 0.40
Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical pr... 33 0.53
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 30 3.7
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 29 6.5
Z81050-4|CAB02854.1| 329|Caenorhabditis elegans Hypothetical pr... 29 8.6
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 29 8.6
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 59.7 bits (138), Expect = 5e-09
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Frame = -3
Query: 564 GTETWSL*IEFIRKLKVTQKAMEGGILGVSLX----XXXXXXXXXXRTKVTDIARRIAKC 397
G+E W+ E + +++VT A+E ++G++L ++K+ D I K
Sbjct: 62 GSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKR 121
Query: 396 KW**ASHVIRRTDARWGPWVL**LPCTGRRSVGRLPTRWTDDLVKVAGVR---------W 244
K A HV RRTD RW + P +R VGR P RW D L K R W
Sbjct: 122 KLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLW 181
Query: 243 IRVAQDRWSWKSL 205
A+DR +WK++
Sbjct: 182 STQAKDRKAWKAV 194
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 52.4 bits (120), Expect = 8e-07
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Frame = -3
Query: 564 GTETWSL*IEFIRKLKVTQKAMEGGILGVSLXXXXXXXXXXXRTKVTDIARR----IAKC 397
G+E W+ ++++T ++E ++G++L + + R + K
Sbjct: 751 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKR 810
Query: 396 KW**ASHVIRRTDARWGPWVL**LPCTGRRSVGRLPTRWTDDLVKVAGVR---------W 244
K A HV RR D RW + P +R VGR P RWTD L K R W
Sbjct: 811 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPW 870
Query: 243 IRVAQDRWSW 214
+A+DR W
Sbjct: 871 STIAKDRKEW 880
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 52.4 bits (120), Expect = 8e-07
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Frame = -3
Query: 564 GTETWSL*IEFIRKLKVTQKAMEGGILGVSLXXXXXXXXXXXRTKVTDIARR----IAKC 397
G+E W+ ++++T ++E ++G++L + + R + K
Sbjct: 926 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKR 985
Query: 396 KW**ASHVIRRTDARWGPWVL**LPCTGRRSVGRLPTRWTDDLVKVAGVR---------W 244
K A HV RR D RW + P +R VGR P RWTD L K R W
Sbjct: 986 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPW 1045
Query: 243 IRVAQDRWSW 214
+A+DR W
Sbjct: 1046 STIAKDRKQW 1055
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 52.4 bits (120), Expect = 8e-07
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Frame = -3
Query: 564 GTETWSL*IEFIRKLKVTQKAMEGGILGVSLXXXXXXXXXXXRTKVTDIARR----IAKC 397
G+E W+ ++++T ++E ++G++L + + R + K
Sbjct: 665 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKR 724
Query: 396 KW**ASHVIRRTDARWGPWVL**LPCTGRRSVGRLPTRWTDDLVKVAGVR---------W 244
K A HV RR D RW + P +R VGR P RWTD L K R W
Sbjct: 725 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPW 784
Query: 243 IRVAQDRWSW 214
+A+DR W
Sbjct: 785 STIAKDRKQW 794
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 51.6 bits (118), Expect = 1e-06
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Frame = -3
Query: 564 GTETWSL*IEFIRKLKVTQKAMEGGILGVSLXXXXXXXXXXXRTKVTDIARR----IAKC 397
G+E W+ ++++T ++E ++G++L + + R + K
Sbjct: 277 GSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKR 336
Query: 396 KW**ASHVIRRTDARWGPWVL**LPCTGRRSVGRLPTRWTDDLVKVAGVR---------W 244
K A HV RR D RW + P +R VGR P RWTD L K R W
Sbjct: 337 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPW 396
Query: 243 IRVAQDRWSW 214
+A+DR W
Sbjct: 397 STIAKDRKEW 406
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 33.5 bits (73), Expect = 0.40
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +3
Query: 198 SPPKISTTTGLAPPVSSELPRPSPGRRS 281
SPP ST T PP SS P P+P RRS
Sbjct: 169 SPPPSSTPTPTPPPSSSSSPTPTPLRRS 196
>Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical
protein K03D10.3 protein.
Length = 550
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 223 PVLRHPYPANSRDLHQ--VVGPPCGEPTHAASSSTRQLLE 336
PV++ P A DLH+ VVGPP +P+ A + S R+ LE
Sbjct: 118 PVIKVPTKAPVEDLHKEIVVGPPVIKPSGALTRSQRRTLE 157
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 30.3 bits (65), Expect = 3.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Frame = -3
Query: 312 RRSVGRLPTRWTDDLVKVAGVR---------WIRVAQDRWSWKSL 205
+R VG+ P RWTD L K R W A+DR +WK++
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 29.5 bits (63), Expect = 6.5
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 144 MHITNPSIH*TTSTAGHRSPPKISTTTGLAPPVSSELPRPSPGRRSTLWGAYPRCVFQYT 323
+H TN S+ TS +S +I+ L+ PV P PSPG +ST +P T
Sbjct: 182 LHRTNLSVIGATSAQPEKSEAEIA----LSLPVPPLTPLPSPGAQSTAPPVFPTSTPTPT 237
Query: 324 AT 329
+T
Sbjct: 238 ST 239
>Z81050-4|CAB02854.1| 329|Caenorhabditis elegans Hypothetical protein
C50B6.5 protein.
Length = 329
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 943 TGSPILKQYYFNXKTDIYNIFPRFFFGYLRVXSYFXEL 1056
TG I++ Y F K YN F+ YL++ Y +
Sbjct: 104 TGYSIIEMYMFRFKASTYNFQSTCFYVYLQINLYIYRI 141
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 84 THSPRQQKKLKKIVHIIEQIMHITNPSIH*TTSTAGHRSPPKISTTT 224
T PR+ +K +K + TNP I TT T R+ I TTT
Sbjct: 266 TMKPRKSQKPEKKKEVFNVFTTKTNPQITTTTMTTTTRTSTAIPTTT 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,711,466
Number of Sequences: 27780
Number of extensions: 610080
Number of successful extensions: 1388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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