Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D12_e572_08.seq
         (1514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54320.1 68416.m06003 ovule development protein, putative sim...    31   1.5  
At1g73090.1 68414.m08451 expressed protein                             29   8.0  

>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 TTSTAGHRSPPKISTTTGLAPPVSSELPRPSPGRRS 281
           TTST        +S++T  + P+ SE PRP   +R+
Sbjct: 6   TTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRA 41


>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +1

Query: 181 LLLDIDLPQRFPRPPVLRHPYPAN 252
           LL   D PQ FPRP   +HPYP N
Sbjct: 241 LLAIEDYPQGFPRP--AKHPYPFN 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,214,425
Number of Sequences: 28952
Number of extensions: 569096
Number of successful extensions: 1365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)