Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D11_e564_07.seq
         (1540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3779| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.065
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                30   4.3  

>SB_3779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 36.3 bits (80), Expect = 0.065
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 307 YFLQKNNMKNILEDGIKKIGRNRVMVTFKSALAANLFLNNSILVSNNYKTFIPTYNICK 483
           Y   +   KN L +GI K   NRV    K  L+  L L  ++++S   + F P YN+ +
Sbjct: 97  YITIEKQEKNPLRNGIFKAPENRVEPLCKGMLSTTLILILTVVLSEEVRAFNPIYNVTR 155


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 301  FGYFL-QKNNMKNILED----GIKKIGRNRVMVTFKSALAANLFLNNSILVSNNYKTFIP 465
            F YF  +K N+K +L        +K GR  VMVTF S  +A  F+ +  ++  +  +F  
Sbjct: 3576 FVYFCHKKENLKLLLSKIATINYEKKGRGCVMVTFNSPQSARKFMTSGCVLLPSPPSFST 3635

Query: 466  TYNICKLGIV 495
            T  +   G++
Sbjct: 3636 TREVKSEGVI 3645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,026,820
Number of Sequences: 59808
Number of extensions: 584106
Number of successful extensions: 957
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5012030779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)