Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D11_e564_07.seq
         (1540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    33   0.54 
AF098985-3|AAC67421.1|  358|Caenorhabditis elegans Hypothetical ...    29   6.6  

>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 33.1 bits (72), Expect = 0.54
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 580 RRLSRKVSSPEGSTWIPXQTVVLTL*WSSYALSGILLXLFSSC*TIYPIL*XNVFNWXSL 759
           R  + K+S P   T++P +T++  + ++S+    +++ L          L   VF W SL
Sbjct: 465 RAAAAKISHPNPKTFLPHKTIIPHIHFTSFQQVAVIICLS---------LIIWVFRWFSL 515

Query: 760 WSHTWTXQKFI 792
             H WT + FI
Sbjct: 516 SHHHWTARLFI 526


>AF098985-3|AAC67421.1|  358|Caenorhabditis elegans Hypothetical
           protein C08G5.3 protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 163 KILNTGSDGYFSTRQLYKDTDPGPYVVSVELVSEDPKAGTTXHPLKF 303
           KI+    D   +T + +    PG YV  VE   E PK     HP K+
Sbjct: 20  KIIGNTGDASLATWRDWAQCQPGKYVHGVEEKYETPKFIIRKHPKKY 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,942,133
Number of Sequences: 27780
Number of extensions: 459805
Number of successful extensions: 872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4431789446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)