Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D11_e564_07.seq
         (1540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   1.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   2.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 629 LDRQWC*PFDGQAMPSRVFCXYSSLPVEQYILSCXSM 739
           LD QW  PF+G  MP+ +     SL +  + L   S+
Sbjct: 290 LDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSI 326


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 520 HNDIVXNLRIPV-GFGSIIRSRRLSRKVSSPEGSTWIPXQTVVLTL*WSSY 669
           HN I+ N+ I +   GS++ S R+S  +S P      P    V +L  +SY
Sbjct: 131 HNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASY 181


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 520 HNDIVXNLRIPV-GFGSIIRSRRLSRKVSSPEGSTWIPXQTVVLTL*WSSY 669
           HN I+ N+ I +   GS++ S R+S  +S P      P    V +L  +SY
Sbjct: 131 HNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASY 181


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 839 NHMMXHHXYXPIYNAEINFCXV 774
           NHMM    Y   Y   IN C +
Sbjct: 450 NHMMREEFYQSQYGDPINNCEI 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,038
Number of Sequences: 438
Number of extensions: 6702
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53950875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)