Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D11_e564_07.seq
         (1540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16300.2 68418.m01906 expressed protein                             32   0.88 
At5g16300.1 68418.m01905 expressed protein                             32   0.88 

>At5g16300.2 68418.m01906 expressed protein 
          Length = 1034

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 118  LSTKASEVENDXNSDKILNTGS-DGYFSTRQLYKDTDPGPYVVSVELVSEDPKAGTTXHP 294
            ++  A     D    K++N G  DG   T QL +  DP  ++     + E+ K     H 
Sbjct: 862  INRSAYRRRQDQQKTKLVNRGRIDGV--TSQLTQKLDPIDWLTYEPYLWENEKQSYLRHA 919

Query: 295  LKFGYFLQKNNM 330
            + FG+F+Q N M
Sbjct: 920  VLFGFFVQLNRM 931


>At5g16300.1 68418.m01905 expressed protein 
          Length = 1068

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 118  LSTKASEVENDXNSDKILNTGS-DGYFSTRQLYKDTDPGPYVVSVELVSEDPKAGTTXHP 294
            ++  A     D    K++N G  DG   T QL +  DP  ++     + E+ K     H 
Sbjct: 862  INRSAYRRRQDQQKTKLVNRGRIDGV--TSQLTQKLDPIDWLTYEPYLWENEKQSYLRHA 919

Query: 295  LKFGYFLQKNNM 330
            + FG+F+Q N M
Sbjct: 920  VLFGFFVQLNRM 931


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,680,926
Number of Sequences: 28952
Number of extensions: 426082
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)