Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D10_e556_08.seq
         (1476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    56   1e-08
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    32   0.23 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    29   2.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   5.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.6  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 24/42 (57%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
 Frame = -2

Query: 371 VSIFFIFYL--QGWYIITYALGIYHLNLFIAFLTPKIDPAMD 252
           +++FFI  L  +GWYI+ Y L IY LNLF+AFLTPK DP+++
Sbjct: 44  IALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVE 85


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 638 NYILWPCVTIAAACFMRAYTQSLLHDHPSKVFIVYIS*SSTRPN 507
           NYILWP V +    F+    Q +  +  S V+  Y+S  ++ PN
Sbjct: 175 NYILWPAVQLFNFTFVPLVLQVIFANAVSMVWTAYLSLKNSSPN 218


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 547 YLLCILVNLVHDPMVYY*ITFFSGFYLITNYKH*ITKICNVLLMFS 410
           ++  IL +++H+P+V     FFSGF+  T+ K      C +  MFS
Sbjct: 155 FMSVILQSILHNPLVRN--LFFSGFHTSTDCKRPTCMTCAIDDMFS 198


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = -2

Query: 869 LNRICFYPSKYCLKALTKINISLKIVMSFYLVCTRHFNLHLHTFYL-HSLNNSRSINQNL 693
           +N++   P K  LK   K  +S+K  + F+L+   +F L  H   L HSL +   I+  +
Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLFH---ISHLI 177

Query: 692 SMSFITKVNIFS-*KYI*INYILWPCVTI 609
           S  F+     FS   +  +++IL+PC ++
Sbjct: 178 SFHFL----FFSFLSFPLLSFILFPCFSL 202


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 464 YKLQTLNYQNL*CTFNVFSKSRLL*FTSMCFVSIFFIFYLQGWYIITYALGIYHLNLF 291
           + L  L ++N  C FN +S S L   T +  +SI  +FY  GW   + + G+ H + F
Sbjct: 414 WNLHNLPFENP-CLFN-YSFSDLSSLT-ITRLSIGMVFYTHGWTKSSLSTGLLHHHRF 468


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 1321 PXPPPGXGGXGPP 1283
            P PPPG  G GPP
Sbjct: 764  PPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,139,723
Number of Sequences: 5004
Number of extensions: 100729
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 822602210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)