Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D10_e556_08.seq
         (1476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224...    52   1e-06
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32...    50   6e-06
07_03_1136 + 24218601-24218734,24218769-24219906                       32   1.3  
07_01_0068 - 495582-497981                                             29   7.1  
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17...    29   7.1  
02_04_0467 + 23161572-23162757,23162856-23163418                       29   9.3  

>08_02_0134 -
           13021294-13021350,13021478-13021658,13022383-13022433,
           13025134-13025187,13026154-13026248,13026565-13026888
          Length = 253

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = -2

Query: 401 RLL*FTSMCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDP 261
           R L F  +       +++  G+YI+TYALGIY LNL IAFL+P++DP
Sbjct: 58  RWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSPQVDP 104


>01_01_0042 +
           317586-317640,318128-318185,318799-319236,320426-320467,
           320468-320648,320838-320867
          Length = 267

 Score = 49.6 bits (113), Expect = 6e-06
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -2

Query: 356 IFYLQGWYIITYALGIYHLNLFIAFLTPKIDP 261
           ++ +QG+YI+TY LGIY LNL I FL+P +DP
Sbjct: 119 VYLVQGFYIVTYGLGIYLLNLLIGFLSPMVDP 150


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +3

Query: 1284 GGPXPPXPGGGXGYXXPXXPXXAGXXKTXGXXXLRXRXLG-PXLLGXPPAXGXXXXGXGX 1460
            GG  PP PGGG G   P      G     G    R    G    LG PP  G    G G 
Sbjct: 128  GGARPPAPGGGGGGGAPRRVLGGGG---GGGALARPPGGGRGGALGRPPGGGGGGGGPGR 184

Query: 1461 PP 1466
             P
Sbjct: 185  AP 186


>07_01_0068 - 495582-497981
          Length = 799

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -3

Query: 250 LMVSLHVNMILIELGFLKNNI*GAVLCLSIWATYLL 143
           +++SL + +ILI +G ++      V C +IWA YLL
Sbjct: 20  VLLSLLLQVILIFVGPMRKRTSHPVPCFAIWACYLL 55


>07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-174950,
            175792-175818,175946-176251
          Length = 358

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 941  ITLLRFGLFFSXNLIGFRXWPKERTEXGFD-CWQXSSRRC 1057
            I+L RF LFFS  L+ F    +ER   G   CW+  SRRC
Sbjct: 48   ISLSRFPLFFSSLLV-FSA-RRERDLVGVSACWRGLSRRC 85


>02_04_0467 + 23161572-23162757,23162856-23163418
          Length = 582

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 23/99 (23%), Positives = 42/99 (42%)
 Frame = -3

Query: 385 LPCVLLASFLFFIYRDGILLHMLSGSTI*IYSLHF*LQKLTRPWILMVSLHVNMILIELG 206
           L CV   S L  +  +G+ +  +   +  + SL F   +LT P  L  +  ++ + +   
Sbjct: 46  LACVNWPSHLEPVVTEGLGMQPVDAISKKVASLGFNCVRLTYPIALATNASLSSLTVRRS 105

Query: 205 FLKNNI*GAVLCLSIWATYLLDRTLVRCTPCTIGKAGSN 89
            L + + GAV  +      LLD TL+      +   G +
Sbjct: 106 LLAHGLAGAVAGVEANNPGLLDLTLIESFRAVVDSLGES 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,984,897
Number of Sequences: 37544
Number of extensions: 735895
Number of successful extensions: 1443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4710455848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)