Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D10_e556_08.seq
         (1476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.77 
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   7.1  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.4  

>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 32.7 bits (71), Expect = 0.77
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
 Frame = -3

Query: 1474 HXGGGXPXPXXXXPXAGGXPKRXGPRXRXLKXXXPXVFXXPAXKGXXGXK*PXPPP-GXG 1298
            H  GG P P    P  GG P    P         P     P   G    + P PPP G  
Sbjct: 596  HPSGGYPQPS---PPHGGHPHHPPPTG--YPGGYPGTHTAPPAGGYPTGQHPPPPPAGYP 650

Query: 1297 GXGPPXXG 1274
            G GPP  G
Sbjct: 651  GYGPPPAG 658


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 374  FVSIFFIFYLQGWYIITYALGIYHL 300
            F S F IF L  WY+I+ AL +Y+L
Sbjct: 1875 FNSSFGIFILSWWYLISAALTVYNL 1899


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -2

Query: 827 ALTKINISLKIVMSFYLVC----TRHFNLHLHTFYLHSLNNSRSIN 702
           ++  +NI++  VMSF+L C    +R +  +L  F +H+L ++ S+N
Sbjct: 406 SVMNLNITICEVMSFFLECKCENSRAWITNLEEFVVHALTSNLSLN 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,724,226
Number of Sequences: 59808
Number of extensions: 757694
Number of successful extensions: 1619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4765537462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)