Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D10_e556_08.seq
         (1476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456806-1|CAG33087.1|  196|Homo sapiens RER1 protein.                 71   8e-12
BT007224-1|AAP35888.1|  196|Homo sapiens similar to S. cerevisia...    71   8e-12
BC004965-1|AAH04965.1|  196|Homo sapiens RER1 retention in endop...    71   8e-12
AL513477-5|CAI22607.1|  187|Homo sapiens RER1 retention in endop...    71   8e-12
AL513477-4|CAI22606.1|  158|Homo sapiens RER1 retention in endop...    71   8e-12
AL513477-2|CAI22604.1|  196|Homo sapiens RER1 retention in endop...    71   8e-12
AJ001421-1|CAA04754.1|  196|Homo sapiens Rer1 protein protein.         71   8e-12
AF157324-1|AAF67490.1|  214|Homo sapiens RER1 protein protein.         71   8e-12
AF091071-1|AAC72940.1|  206|Homo sapiens Rer1 protein.                 71   8e-12

>CR456806-1|CAG33087.1|  196|Homo sapiens RER1 protein.
          Length = 196

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>BT007224-1|AAP35888.1|  196|Homo sapiens similar to S. cerevisiae
           RER1 protein.
          Length = 196

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>BC004965-1|AAH04965.1|  196|Homo sapiens RER1 retention in
           endoplasmic reticulum 1 homolog (S. cerevisiae) protein.
          Length = 196

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>AL513477-5|CAI22607.1|  187|Homo sapiens RER1 retention in
           endoplasmic reticulum 1 homolog; alpha polypeptide
           protein.
          Length = 187

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>AL513477-4|CAI22606.1|  158|Homo sapiens RER1 retention in
           endoplasmic reticulum 1 homologdogene protein.
          Length = 158

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>AL513477-2|CAI22604.1|  196|Homo sapiens RER1 retention in
           endoplasmic reticulum 1 homologquitin protein ligase 1
           protein.
          Length = 196

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>AJ001421-1|CAA04754.1|  196|Homo sapiens Rer1 protein protein.
          Length = 196

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>AF157324-1|AAF67490.1|  214|Homo sapiens RER1 protein protein.
          Length = 214

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


>AF091071-1|AAC72940.1|  206|Homo sapiens Rer1 protein.
          Length = 206

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -2

Query: 380 MCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAM 255
           + FV +  ++ LQGWYI+TYALGIYHLNLFIAFL+PK+DP++
Sbjct: 50  LSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSL 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,778,579
Number of Sequences: 237096
Number of extensions: 4159867
Number of successful extensions: 8223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8145
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21814035332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)