Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D10_e556_08.seq
         (1476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...    60   3e-09
U23524-4|AAC46824.1|  173|Caenorhabditis elegans Hypothetical pr...    32   1.2  
U23521-3|AAC46814.2|  213|Caenorhabditis elegans Hypothetical pr...    30   3.6  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    30   4.8  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    29   6.3  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    29   6.3  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    29   6.3  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    29   6.3  

>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = -2

Query: 356 IFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAMDFD 246
           I  LQG+YI+ YA+GIY+LNLF+ FLTP IDPA++F+
Sbjct: 52  IILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFE 88


>U23524-4|AAC46824.1|  173|Caenorhabditis elegans Hypothetical protein
            C29F5.5 protein.
          Length = 173

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 896  SLFLEIKSRFHLRFLITLLRFGLFFSXNLIGFRXWPKERTEXGFDCWQXSSRRCLPWSKX 1075
            +LFL         FLI +L +G F      G R W K       DC    +++C  W + 
Sbjct: 73   ALFLRFVQLMFFNFLINVLLYG-FIQFLARGSRIWEKSGERCFVDCSIEGTQKCYGWFRW 131

Query: 1076 K 1078
            K
Sbjct: 132  K 132


>U23521-3|AAC46814.2|  213|Caenorhabditis elegans Hypothetical
           protein F41C3.7 protein.
          Length = 213

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 791 MSFYLVCTRHFNLHLHTFYLHSLNNSRSINQNLS 690
           M  Y++ T+    H ++FY   + NS ++N NLS
Sbjct: 1   MCIYVLTTKSSKFHSYSFYNKKIPNSSNMNSNLS 34


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = -2

Query: 569 LHDHPSKVFIVYIS*SSTRPNGLLLNNIFFRVLLNYKLQTLNYQNL*CT----FNVFSKS 402
           L++  S +++  +   +  P  +L   +  R + +Y    + + NL C+    +NVF+ +
Sbjct: 159 LYERKSAIYLRKLVFGTINPENILC--MLRRAVNSYSFSNVRFSNLVCSNQNVYNVFATN 216

Query: 401 RLL*FTSMCFVSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKID 264
            L+   ++CF S    F      I  ++ G+  L  F+  +    D
Sbjct: 217 GLVKRYNICFYSYITNFVANLLEIEEFSNGLTKLRAFVRLIRNNSD 262


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1237

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 637  IIFYGHVS---PSQRLVL*EHTPSPYFTIIHRKYLLCILVNLVHDPMVYY*ITFFSGFY 470
            +IFYG V    PS R       PS +FTI+   +++  L N ++   ++     F G +
Sbjct: 914  LIFYGEVCFNIPSGRWAPLHSPPSKHFTIVFNTFVMMTLFNEINARKIHGERNIFKGLF 972


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform b protein.
          Length = 1234

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 637  IIFYGHVS---PSQRLVL*EHTPSPYFTIIHRKYLLCILVNLVHDPMVYY*ITFFSGFY 470
            +IFYG V    PS R       PS +FTI+   +++  L N ++   ++     F G +
Sbjct: 914  LIFYGEVCFNIPSGRWAPLHSPPSKHFTIVFNTFVMMTLFNEINARKIHGERNIFKGLF 972


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform a protein.
          Length = 1160

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 637  IIFYGHVS---PSQRLVL*EHTPSPYFTIIHRKYLLCILVNLVHDPMVYY*ITFFSGFY 470
            +IFYG V    PS R       PS +FTI+   +++  L N ++   ++     F G +
Sbjct: 914  LIFYGEVCFNIPSGRWAPLHSPPSKHFTIVFNTFVMMTLFNEINARKIHGERNIFKGLF 972


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform c protein.
          Length = 1137

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 637  IIFYGHVS---PSQRLVL*EHTPSPYFTIIHRKYLLCILVNLVHDPMVYY*ITFFSGFY 470
            +IFYG V    PS R       PS +FTI+   +++  L N ++   ++     F G +
Sbjct: 914  LIFYGEVCFNIPSGRWAPLHSPPSKHFTIVFNTFVMMTLFNEINARKIHGERNIFKGLF 972


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,469,396
Number of Sequences: 27780
Number of extensions: 622987
Number of successful extensions: 1703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4235517946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)