Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D10_e556_08.seq
         (1476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RE...    54   3e-07
At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RE...    54   3e-07
At4g39220.1 68417.m05552 RER1A protein identical to SP|O48670 RE...    51   2e-06
At2g21600.1 68415.m02569 RER1B protein identical to SP|O48671 RE...    47   3e-05
At2g18240.2 68415.m02126 RER1 protein, putative similar to SP|O4...    45   1e-04
At2g18240.1 68415.m02125 RER1 protein, putative similar to SP|O4...    45   1e-04
At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family prot...    31   2.5  
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    29   7.8  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   7.8  
At1g52190.1 68414.m05889 proton-dependent oligopeptide transport...    29   7.8  

>At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RER1C
           protein (AtRER1C) {Arabidopsis thaliana}
          Length = 211

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 23/42 (54%), Positives = 34/42 (80%), Gaps = 2/42 (4%)
 Frame = -2

Query: 380 MCFVSIFFI--FYLQGWYIITYALGIYHLNLFIAFLTPKIDP 261
           +C V I+ +  ++++G+YIITYA+GIY LNL IAFL+P+ DP
Sbjct: 67  LCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDP 108


>At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RER1C
           protein (AtRER1C) {Arabidopsis thaliana}
          Length = 212

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 23/42 (54%), Positives = 34/42 (80%), Gaps = 2/42 (4%)
 Frame = -2

Query: 380 MCFVSIFFI--FYLQGWYIITYALGIYHLNLFIAFLTPKIDP 261
           +C V I+ +  ++++G+YIITYA+GIY LNL IAFL+P+ DP
Sbjct: 67  LCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDP 108


>At4g39220.1 68417.m05552 RER1A protein identical to SP|O48670 RER1A
           protein (AtRER1A) {Arabidopsis thaliana}
          Length = 191

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -2

Query: 356 IFYLQGWYIITYALGIYHLNLFIAFLTPKIDP 261
           ++Y+QG+YII Y LGIY LNL I FL+P +DP
Sbjct: 55  VYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDP 86


>At2g21600.1 68415.m02569 RER1B protein identical to SP|O48671 RER1B
           protein (AtRER1B) {Arabidopsis thaliana}
          Length = 195

 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = -2

Query: 356 IFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAMD 252
           ++ + G+YII+Y LGIY LNL I FL+P +DP ++
Sbjct: 55  VYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELE 89


>At2g18240.2 68415.m02126 RER1 protein, putative similar to
           SP|O48671 RER1B protein (AtRER1B) {Arabidopsis
           thaliana}, SP|O48670 RER1A protein (AtRER1A)
           {Arabidopsis thaliana}; contains Pfam profile PF03248:
           Rer1 family
          Length = 220

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 29/40 (72%)
 Frame = -2

Query: 371 VSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAMD 252
           + I+ ++ + G+++I+Y L  Y LNL I FL+PK+DP ++
Sbjct: 54  IYIYRVYSVYGYFVISYGLATYILNLLIGFLSPKVDPELE 93


>At2g18240.1 68415.m02125 RER1 protein, putative similar to
           SP|O48671 RER1B protein (AtRER1B) {Arabidopsis
           thaliana}, SP|O48670 RER1A protein (AtRER1A)
           {Arabidopsis thaliana}; contains Pfam profile PF03248:
           Rer1 family
          Length = 221

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 29/40 (72%)
 Frame = -2

Query: 371 VSIFFIFYLQGWYIITYALGIYHLNLFIAFLTPKIDPAMD 252
           + I+ ++ + G+++I+Y L  Y LNL I FL+PK+DP ++
Sbjct: 54  IYIYRVYSVYGYFVISYGLATYILNLLIGFLSPKVDPELE 93


>At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains Pfam profile
           PF00657: Lipase/Acylhydrolase with GDSL-like motif
          Length = 372

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 89  IGSGFTYGAGCAAHQRPV*QIRRPDRKTKYRPLNIVFKKTQLYQYHINMKT 241
           +GS F++GA  A    P+  +    R++ + P ++  +  Q Y +H   +T
Sbjct: 93  VGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQT 143


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 308 YHLNLFIAFLTPKIDPAMDFDGKSSC 231
           Y+L L  A L   +DP+++F GK SC
Sbjct: 65  YNLFLMSAVLMDDVDPSIEFKGKLSC 90


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
            protein Common family members: At4g18570, At4g04980,
            At5g61090 [Arabidopsis thaliana];  identical to cDNA
            CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 1475 PXGGGGPXPXPPXPXGG 1425
            P  GGGP P PP P GG
Sbjct: 673  PLPGGGPPPPPPPPGGG 689


>At1g52190.1 68414.m05889 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 607

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 472 YLITNYKH*ITKICNVLLMFSVKADYYNLLPCVLLASFL 356
           YLI +Y+  + K  NVL M+S  +++  LL   L  S+L
Sbjct: 52  YLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYL 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,513,552
Number of Sequences: 28952
Number of extensions: 551078
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3922906944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)