Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D09_e548_07.seq
         (1557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   3.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   4.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   4.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 165 LSFPLHDSPLPTGVAAAPRHPYLYVNNHY 251
           LS P  + P  T     P HPY  ++N Y
Sbjct: 107 LSSPSGNVPPLTPSPGPPSHPYTVISNGY 135


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 552 LLVSTFVCDTTFVKYKILMKEIYTL 626
           +L++  VC+ T ++YK   K +Y +
Sbjct: 293 ILITVTVCELTILEYKRTKKLLYRI 317


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 552 LLVSTFVCDTTFVKYKILMKEIYTL 626
           +L++  VC+ T ++YK   K +Y +
Sbjct: 118 ILITVTVCELTILEYKRTKKLLYRI 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,456
Number of Sequences: 336
Number of extensions: 2992
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46910650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)