Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D09_e548_07.seq
         (1557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1007 + 13160772-13161311                                         32   1.1  
09_04_0306 + 16555664-16556623                                         29   7.5  

>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 147 PNPPGSLSFPLHDSPLPTGVAAAPRHPYLYVNNHYK 254
           P PP  +  P   +P P  VAA P+ PY Y  + +K
Sbjct: 9   PAPPSPVQAPAPAAPPPVSVAARPQAPYYYYCHGWK 44


>09_04_0306 + 16555664-16556623
          Length = 319

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 PNPPGSLSFPLHDSPLPTGVAAAPRHP 227
           P PPGS+S P++ SP+    AA  R P
Sbjct: 194 PAPPGSVSHPINGSPVVPAAAALWRVP 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,938
Number of Sequences: 37544
Number of extensions: 304988
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)