Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D08_e540_08.seq
         (1536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     27   0.37 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   2.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   2.0  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 27.1 bits (57), Expect = 0.37
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 63  AGNSARGVCCDLLGN--CIVK--MPKYYCDYCDTYLTHDSPSVRKTH 191
           +GNS   V CD +G    I+K  +PK Y DYC    T +S SVR +H
Sbjct: 642 SGNST--VDCDDVGTFGAILKKLLPKVYEDYCP---TSNSGSVRMSH 683


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 425 TSANDGSRRPHGAT-YDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTP 586
           T+ + G+R    +T + DG S  +     +  +Y GP+N      G  G     P
Sbjct: 48  TNGDGGARSNADSTSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAP 102


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 425 TSANDGSRRPHGAT-YDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTP 586
           T+ + G+R    +T + DG S  +     +  +Y GP+N      G  G     P
Sbjct: 204 TNGDGGARSNADSTSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAP 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,616
Number of Sequences: 336
Number of extensions: 5693
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46193675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)