Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D08_e540_08.seq
         (1536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    68   3e-12
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    39   0.002
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   1.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    29   1.7  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    28   3.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   6.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   9.1  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID--ATTAAFK 293
           MP+Y CDYC  +LTHDS SVRK H  GR H  NV+ YY K  +E+AQ  ++  A++   K
Sbjct: 1   MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60

Query: 294 AG 299
            G
Sbjct: 61  KG 62


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 224
           +PKYYC YC  ++  D+P  R++H    KH+D +K
Sbjct: 8   IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 144 CDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQK--WMEEQAQH 263
           CD  L H+ P + K++ T R H  + + ++Q+   +  Q QH
Sbjct: 89  CDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQH 130


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 482 SWSNASNDGNETTYDGPINGSYGPNGADGTDETT 583
           +W+N    G  +++DG    ++ P+  DG   T+
Sbjct: 488 AWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNTS 521


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDE 577
           +ANDG   P     + GP W   S D N+     P       NG+DG D+
Sbjct: 306 AANDGPCAPPEYAENHGPGW--RSGDNNKKVIVPPNFHQVKLNGSDGYDK 353


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 422 DTSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPYECTT 601
           D+ AN  +  P+G++  D  + S   N G+ T  DG  +GS+  + A+ T+   PY   T
Sbjct: 140 DSLANVYNSVPYGSSPYDFSNSSFVGNSGSGTPLDGD-SGSFYADSANLTNR-EPYPAWT 197

Query: 602 NE 607
            E
Sbjct: 198 PE 199


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 266 KMLCLFFHPFLIVKFHIVFMFSTCTVSFP 180
           +  CL F PFL   F     F+  T+S P
Sbjct: 286 RFFCLIFFPFLFFLFWFYMHFNILTISGP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,540,206
Number of Sequences: 5004
Number of extensions: 84439
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 862245690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)