Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D08_e540_08.seq
         (1536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    89   7e-18
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833...    38   0.028
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587...    37   0.037
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151     33   0.79 
01_02_0048 - 10626467-10627498,10628522-10628617                       31   2.4  
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850...    29   7.4  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    29   7.4  
10_08_0234 - 16067579-16068157                                         29   9.8  

>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 89.4 bits (212), Expect = 7e-18
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 272
           MP+YYCDYCDTYLTHDSPSVRK H  G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51


>01_01_1054 +
           8330081-8330137,8330229-8330321,8330445-8330504,
           8330703-8330975,8331107-8331181,8331269-8331325,
           8331409-8331549,8331656-8331706,8331795-8331944,
           8331974-8332057,8332171-8332273,8332451-8332527,
           8333469-8333704,8334000-8334078,8335123-8335218,
           8335735-8335828,8336325-8336423,8336663-8337453
          Length = 871

 Score = 37.5 bits (83), Expect = 0.028
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 126 KYYCDYCDTYLTHDSPSVRKTHCTGRKH 209
           KYYCDYC+     D+P+ RK H  G +H
Sbjct: 453 KYYCDYCEKQF-QDTPAARKRHLDGAQH 479


>06_01_0784 -
           5868545-5868888,5868990-5869085,5870313-5870394,
           5870639-5870839,5871810-5871818
          Length = 243

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 132 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 221
           +CD+C  Y+ ++  S+R TH  G++HKDNV
Sbjct: 12  WCDFCKIYIANNPLSIR-THEIGKRHKDNV 40


>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
          Length = 124

 Score = 32.7 bits (71), Expect = 0.79
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 224
           M ++YC +CD Y    S SV++ H   ++HK  +K
Sbjct: 61  MGQFYCLHCDRYFA--SESVKEEHYRSKRHKKRIK 93


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 335 CTFCAKWILCNFTSFKCCCC 276
           C  C+  +L  + SF CCCC
Sbjct: 73  CRLCSSCLLLEYRSFYCCCC 92


>10_05_0043 +
           8503979-8504407,8506484-8506624,8506865-8506975,
           8507746-8508330
          Length = 421

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 135 CDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 224
           C+ C   +  D+P V + H TG+KHK N++
Sbjct: 280 CEVCK--IQCDTPEVLRIHKTGKKHKKNLE 307


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 267 IDATTAAFKAGKIAQNPFGTKGASIPPPWDP 359
           +DAT  A   G IA  P G +G   PPP  P
Sbjct: 524 VDATVVAAAGGGIAIGPLGEEGLVGPPPPPP 554


>10_08_0234 - 16067579-16068157
          Length = 192

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 440 GSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNG 559
           GS      TY  GPS++NA  +GN    +G   G+YG +G
Sbjct: 142 GSGSSSANTYYGGPSYANADANGNG---NGKGTGTYGGSG 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,744,176
Number of Sequences: 37544
Number of extensions: 601129
Number of successful extensions: 1336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4942498008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)