Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_D08_e540_08.seq
(1536 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 140 2e-32
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 140 2e-32
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 140 2e-32
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 140 2e-32
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 136 2e-31
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 134 1e-30
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 77 2e-13
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 48 9e-05
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 39 0.042
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 39 0.042
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 39 0.042
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 39 0.042
CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein. 33 2.1
CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein. 33 2.1
BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin typ... 33 2.1
AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein pr... 33 2.1
Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type ... 32 4.9
Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type ... 32 4.9
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 299
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 300 KIAQNPFGT---KGASIPPP 350
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 299
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 300 KIAQNPFGT---KGASIPPP 350
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 299
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 300 KIAQNPFGT---KGASIPPP 350
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 140 bits (338), Expect = 2e-32
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 299
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 300 KIAQNPFGT---KGASIPPP 350
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 136 bits (329), Expect = 2e-31
Identities = 60/80 (75%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 299
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKH++N K YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 300 KIAQNPFGT---KGASIPPP 350
KI PF GA IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 134 bits (323), Expect = 1e-30
Identities = 59/78 (75%), Positives = 64/78 (82%), Gaps = 3/78 (3%)
Frame = +3
Query: 126 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKI 305
++YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ GKI
Sbjct: 24 RFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKI 83
Query: 306 AQNPFGT---KGASIPPP 350
PF GA IPPP
Sbjct: 84 PPTPFSAPPPAGAMIPPP 101
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 77.0 bits (181), Expect = 2e-13
Identities = 37/53 (69%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +3
Query: 201 RKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGT---KGASIPPP 350
RKHK+NVK YYQKWMEEQAQ LID TTAAF+ GKI PF GA IPPP
Sbjct: 4 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 48.0 bits (109), Expect = 9e-05
Identities = 25/39 (64%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +3
Query: 243 MEEQAQHLIDATTAAFKAGKIAQNPFGT---KGASIPPP 350
MEEQAQ LID TTAAF+ GKI PF GA IPPP
Sbjct: 1 MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 39
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.042
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 123 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 302
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.042
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 123 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 302
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.042
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 123 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 302
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.042
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 123 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 302
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 126 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 257
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 126 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 257
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin type 5
protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 126 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 257
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein
protein.
Length = 170
Score = 33.5 bits (73), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 126 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 257
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 32.3 bits (70), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 132 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEE 251
+C C L +S + +H G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 32.3 bits (70), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 132 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEE 251
+C C L +S + +H G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,558,412
Number of Sequences: 237096
Number of extensions: 3440806
Number of successful extensions: 9715
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9709
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22910218012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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