Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D08_e540_08.seq
         (1536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...   113   2e-25
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    31   2.9  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    31   2.9  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    31   2.9  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    30   3.8  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    29   8.8  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    29   8.8  

>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score =  113 bits (273), Expect = 2e-25
 Identities = 51/78 (65%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 299
           MPKYYCDYCDT+LTHDSPSVRKTH  GRKHKDNV+ +YQKWME+QAQ L+D T  AF   
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60

Query: 300 KI-AQNPFGTKG-ASIPP 347
           ++    P  T G A +PP
Sbjct: 61  RMQGAVPRTTMGMAPVPP 78


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = +2

Query: 422 DTSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPYECTT 601
           D S N G   P   T  D P+   + N  N TT D   NGS  P+  DG    T    TT
Sbjct: 67  DPSPNAGV--PSNGTQSD-PAGDGSMNKANTTTADS--NGSLNPDDGDGKSLLTDRNSTT 121

Query: 602 N 604
           +
Sbjct: 122 S 122


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
 Frame = +2

Query: 302 NCTKSIWHKRCIYSTTLGSFSDGXXXXXXXXXXXXXXXXHDTSANDGSRRPHGATYDDGP 481
           NC KSI  ++     +  SF+                    T    G+R P G    +G 
Sbjct: 32  NCAKSIIDRKLRKYASETSFATETASESSLEREVPSRSRVFTVKPVGTRTPGGIVLTNGA 91

Query: 482 SWSNASNDG----NETTYDGPINGSYGPNGADGTDETTPYEC 595
           S SN++N+G    +   +D   +GS        +   TP  C
Sbjct: 92  SNSNSTNNGGVHRSRRRHDSDASGSANSEATVASGANTPRRC 133


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
 Frame = +2

Query: 302 NCTKSIWHKRCIYSTTLGSFSDGXXXXXXXXXXXXXXXXHDTSANDGSRRPHGATYDDGP 481
           NC KSI  ++     +  SF+                    T    G+R P G    +G 
Sbjct: 32  NCAKSIIDRKLRKYASETSFATETASESSLEREVPSRSRVFTVKPVGTRTPGGIVLTNGA 91

Query: 482 SWSNASNDG----NETTYDGPINGSYGPNGADGTDETTPYEC 595
           S SN++N+G    +   +D   +GS        +   TP  C
Sbjct: 92  SNSNSTNNGGVHRSRRRHDSDASGSANSEATVASGANTPRRC 133


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETT 583
           ++  G +    AT ++G  W  A   G   T+  PI+ ++G  G  GTD TT
Sbjct: 90  ASEKGEKITFKATGNNGSIWVAALMSG---TFTSPIHETHGHTGGTGTDGTT 138


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 482 SWSNASNDGNETTYDGPINGSYGPNGADGTD 574
           SW NAS+  N+  Y  P + SY  NG   TD
Sbjct: 321 SWYNASSTSNDGFYGYPGSPSYEKNGTIRTD 351


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +1

Query: 697 MEYYISD--VYTVQKVVTFERVSIVYTSLSDLVPNVKN 804
           ++Y++ D  V  ++K+V+FE V+    S+ DLV +++N
Sbjct: 156 LQYFVEDFEVTILEKLVSFETVTFNQMSIRDLVYSIEN 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,026,904
Number of Sequences: 27780
Number of extensions: 517182
Number of successful extensions: 1255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4421410548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)