Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D08_e540_08.seq
         (1536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   9.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   9.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   9.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   9.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 455 HGATYDDGPSWSNASNDGNETTYDG 529
           HG  Y D   +SN   + N   Y+G
Sbjct: 276 HGLYYVDTEQFSNPQYEENNVQYEG 300


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 928  SVLXRPGLGKPWRSXXYXPFXTSPFSPAWXYXQK 1029
            +V  RPG     R     PF TS   P+  +  K
Sbjct: 549  AVTLRPGSNSIERQSSESPFTTSTIMPSDIFYDK 582


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 928  SVLXRPGLGKPWRSXXYXPFXTSPFSPAWXYXQK 1029
            +V  RPG     R     PF TS   P+  +  K
Sbjct: 549  AVTLRPGSNSIERQSSESPFTTSTIMPSDIFYDK 582


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 177 VRKTHCTGRKHKDNVK 224
           +R THC      DN++
Sbjct: 409 IRNTHCVNNNQNDNIQ 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,896
Number of Sequences: 438
Number of extensions: 6911
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53831250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)