Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D08_e540_08.seq
         (1536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1 68417.m00425 proline-rich family protein similar to ...    90   3e-18
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ...    33   0.66 
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ...    31   2.7  
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce...    31   2.7  
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t...    30   3.5  
At5g28480.1 68418.m03462 hypothetical protein                          29   6.2  
At3g56960.1 68416.m06338 phosphatidylinositol-4-phosphate 5-kina...    29   6.2  
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P...    29   6.2  
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    29   6.2  

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 272
           MP+YYCDYCDTYLTHDSPSVRK H  G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLID 51


>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 485

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 422 DTSANDGSRRPHGATYDDGPSWSNAS-NDGNETTYDGPINGSYGPNGADGTDE 577
           D   +DGS    G  Y+DGP WS  S     E  Y    +G Y  +G D + E
Sbjct: 26  DDDDDDGSGSGSGGGYEDGPKWSVQSIPTKKEVEYPIIDSGDYVDDGYDSSGE 78


>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; weak similarity to Zinc finger protein T86
           (Swiss-Prot:O00488) [Homo sapiens]
          Length = 198

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 120 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 221
           M ++YC +CD Y +  + SVR  H   +KHK  V
Sbjct: 55  MGQFYCLHCDRYFS--NVSVRDDHFKTKKHKKRV 86


>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
           growth regulating nucleolar protein (Swiss-Prot:Q08288)
           [Mus musculus]
          Length = 275

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 129 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHL 266
           ++C  C+T  T  S      H  G+KH+   K ++ +  +EQ+  L
Sbjct: 95  WFCSLCNTKAT--SQQTLLAHADGKKHRGKAKAFHARQQQEQSTTL 138


>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
           A. thaliana CHP-rich proteins
          Length = 658

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +3

Query: 69  NSARGVCCDLLGNCIVKMPKYYCDYCDTYLTH---DSPSVRKTHCTGRKH 209
           N  RG CC   G        YYC  CD ++     D PS    H +  KH
Sbjct: 21  NLKRGPCCGCCGRFEAISDGYYCKTCDFFVRKNCADEPSEYIKHPSHPKH 70


>At5g28480.1 68418.m03462 hypothetical protein
          Length = 1230

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTD 574
           S  DG   P G   + GPS  +     +    +G  NG+ G  G +G D
Sbjct: 422 SGGDGEGGPSGGDGEGGPSGGDGEGGPSGGDGEGGPNGADGEGGPNGAD 470



 Score = 29.1 bits (62), Expect = 8.2
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADG 568
           S  DG   P G   + GPS  +     N        +G  GPNGADG
Sbjct: 431 SGGDGEGGPSGGDGEGGPSGGDGEGGPNGA------DGEGGPNGADG 471


>At3g56960.1 68416.m06338 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 779

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 419 HDTSANDGSRRPHGA-TYDDGPSW-SNASNDGNETTYDGPINGSYGPNGADGTDETTPYE 592
           +D   +DG  R +G   + DG  +  + SND  E      +NG+Y P+G DG+ E  P +
Sbjct: 215 YDGFWDDGFPRGNGTFKWADGSFYVGHWSNDPEE------MNGTYYPSGDDGSPEWDPKD 268

Query: 593 CTTN 604
             TN
Sbjct: 269 VFTN 272


>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At5g28270, At2g05450,
           At1g45090, At2g16180, At2g06750
          Length = 1224

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTD 574
           S  DG   P G   + GPS  +     +    +G  NG+ G  G +G D
Sbjct: 435 SGGDGEGGPSGGDGEGGPSGGDGEGGPSGGDGEGGPNGADGEGGPNGAD 483



 Score = 29.1 bits (62), Expect = 8.2
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADG 568
           S  DG   P G   + GPS  +     N        +G  GPNGADG
Sbjct: 444 SGGDGEGGPSGGDGEGGPSGGDGEGGPNGA------DGEGGPNGADG 484


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
           At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1210

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTD 574
           S  DG   P G   + GPS  +     +    +G  NG+ G  G +G D
Sbjct: 426 SGGDGEGGPSGGDGEGGPSGGDGEGGPSGGDGEGGPNGADGEGGPNGAD 474



 Score = 29.1 bits (62), Expect = 8.2
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 428 SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADG 568
           S  DG   P G   + GPS  +     N        +G  GPNGADG
Sbjct: 435 SGGDGEGGPSGGDGEGGPSGGDGEGGPNGA------DGEGGPNGADG 475


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,416,316
Number of Sequences: 28952
Number of extensions: 465479
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4115678784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)