Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D06_e524_08.seq
         (1528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    28   3.9  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   6.8  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 465 TKVARRRNKHGKAKRKTRAVXTRXESTPVHREPNKP 572
           TK   RR    K +RK R   T  EST V+    KP
Sbjct: 534 TKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKP 569


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 167 SRSAISTSVPAPRTPPCAGTRAGSARACGRDESPSLVPNXL 45
           SRSA STS     TPP       +AR+    ++PS   N +
Sbjct: 336 SRSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,137
Number of Sequences: 5004
Number of extensions: 33830
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)