Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D06_e524_08.seq
         (1528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0261 + 2131189-2131737                                           31   2.4  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    29   7.4  
02_04_0537 - 23734010-23734715,23735326-23735333                       29   7.4  
03_06_0600 + 34988743-34989407,34990033-34990051                       29   9.7  
01_05_0574 + 23363575-23363788,23364437-23364534                       29   9.7  

>08_01_0261 + 2131189-2131737
          Length = 182

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 197 RYRARPGPXGSRSAISTSVPAPRTPPCAGTRAGSARACGRDESPS 63
           +  A     GS +A+S   P PRTP      A    A GR  SPS
Sbjct: 111 KVEAATATGGSGTALSPMAPRPRTPTAMAPNAMPPMAGGRPVSPS 155


>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
            21800918-21800957,21801471-21801766,21802696-21802774,
            21803013-21803100,21803189-21803273,21803364-21803625,
            21803720-21805027,21806187-21806393,21807288-21807519,
            21808267-21808353,21808427-21808735,21808879-21808957,
            21809788-21809867,21809952-21810029,21810744-21810831,
            21811102-21811241,21811342-21811415,21812043-21812125,
            21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 216  SMGDVWSIQSPTGSXREPFSDI 151
            SMGD +S Q PTG  RE  S I
Sbjct: 1148 SMGDAYSFQHPTGDIRESSSSI 1169


>02_04_0537 - 23734010-23734715,23735326-23735333
          Length = 237

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +1

Query: 73  SSRPQARADPARVPAQGGVRGAGTLVDIAERLPXGPGRALYRPHVA 210
           S  P  RA PAR P  G   G G     + R    P  +  R H A
Sbjct: 101 SPSPPRRASPARSPTAGAAGGGGRRSPASPRTASSPRSSRARAHPA 146


>03_06_0600 + 34988743-34989407,34990033-34990051
          Length = 227

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 176 PXGSRSAISTSVPAPRTPPCAGTRAGSARAC 84
           P GS ++ S S P P  PP  G R  S R C
Sbjct: 140 PPGSAASPSVSCPPPPPPPPPGPRRISCRKC 170


>01_05_0574 + 23363575-23363788,23364437-23364534
          Length = 103

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 28  WIPXFCRXXGTREGDSSRPQARADPARVPAQGGVRGAGTL 147
           WI  + R  G    D   P +R DPAR+   G  +  G L
Sbjct: 30  WIQLWRRGAGGASVDPVPPSSRVDPARMKTMGRRQDGGNL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,921
Number of Sequences: 37544
Number of extensions: 295473
Number of successful extensions: 1361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)