Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_D06_e524_08.seq
(1528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_1285| Best HMM Match : SET (HMM E-Value=0.011) 31 2.4
SB_23786| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 29 7.4
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 29 9.8
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 9.8
SB_55622| Best HMM Match : AT_hook (HMM E-Value=3.2) 29 9.8
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 29 9.8
SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44) 29 9.8
>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 469 KSPAXGTSTEKRRGKPXQXRHGXK 540
K+PA GT+TE RRG P + + G K
Sbjct: 400 KTPATGTATENRRGFPEEMKDGRK 423
>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
Length = 829
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 469 KSPAXGTSTEKRRGKPXQXRHGXK 540
K+PA GT+ E RRG P + ++G K
Sbjct: 400 KTPATGTAAENRRGFPEEMKNGRK 423
>SB_23786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 30.7 bits (66), Expect = 3.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 456 EMKTKVARRRNKHGKAKRKTRAVXTRXESTPVHREPNKPLLXPSRXX*QSXRXVXEVKIQ 635
E++T + NKH KAK+ T+ + R E R+P R +S + E KI+
Sbjct: 100 EIQTHKRTKNNKHRKAKKTTQTIEWRREEKQ-RRKPRVKTGKSDRNQQESWKKPREKKIE 158
Query: 636 LR 641
L+
Sbjct: 159 LQ 160
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 200 GRYRARPGPXGSRSAISTSVPAPRTPPCAGTRAGSARACGRDESP 66
GR +AR P S ++S PAP + P TR + E+P
Sbjct: 1216 GRGKARKSPQKITSHGTSSTPAPNSTPAKRTRGRGVKVKDEPETP 1260
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 419 ELARQXALGENSRDENESRPPXEQARKSEEENPXSXDTEXKHTXPSRAK*AVTXSKPXRX 598
E+ R+ G S DE++++ A++SE +P + D E + T + A + KP
Sbjct: 862 EIERELQNGLESGDEDDTKA---DAQRSETNSP-TLDVETQQTADNPAMTEKSKKKPKPS 917
Query: 599 TIDXSRE 619
++ SRE
Sbjct: 918 ALEGSRE 924
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 29.1 bits (62), Expect = 9.8
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = +3
Query: 348 PTGATRMXRK*ASVLRHVSVESRXNXLDXQLSVKIAEMKTK-VARRRNKHGKAKRKTRAV 524
PTG T V S + + +D LSV + + N H A + +
Sbjct: 1908 PTGRTAQSPSGGIVAITASAQPTSSEIDNSLSVSTSRSPAMHKSSLHNHHSSATKPKLTI 1967
Query: 525 XTRXESTPVHREPNKPLLXPSR 590
T+ HR P+K P++
Sbjct: 1968 PTKSRVKSYHRPPSKGTQIPNK 1989
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPAPRTPPCAGTRAGSARACGRDE---SPSLVP 54
VP PR PP RA S +C D+ PSL P
Sbjct: 675 VPPPRPPPVNKERAESVASCSEDQVYSVPSLTP 707
>SB_55622| Best HMM Match : AT_hook (HMM E-Value=3.2)
Length = 257
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 91 RADPARVPAQGGVRGAGTLVDIAERLPXGPGRALYRPHVAHRLPGGR*TREW 246
++D +P G + A T+VD+ E + L+R + L G REW
Sbjct: 108 QSDLLFLPTDRGYKYALTVVDVVESFHRWLAQRLFRAQYSKELASGETNREW 159
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 143 VPAPRTPPCAGTRAGSARACGRDE---SPSLVP 54
VP PR PP RA S +C D+ PSL P
Sbjct: 454 VPPPRPPPVNKERAESVASCSEDQVYSVPSLTP 486
>SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44)
Length = 850
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 91 RADPARVPAQGGVRGAGTLVDIAERLPXGPGRALYRPHVAHRLPGGR*TREW 246
++D +P G + A T+VD+ E + L+R + L G REW
Sbjct: 660 QSDLLFLPTDRGYKYALTVVDVVESFHRWLAQRLFRAQYSKELASGETNREW 711
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,537,180
Number of Sequences: 59808
Number of extensions: 300550
Number of successful extensions: 1110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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