Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D06_e524_08.seq
         (1528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    29   8.7  
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    29   8.7  
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    29   8.7  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   8.7  

>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
           methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 446 ENSRDENESRPPXEQARKSEEENPXSXDT 532
           +NS+   ES+ P E+AR+    NP S  T
Sbjct: 262 KNSKQSGESQSPWERAREKSASNPLSSPT 290


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
           methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 446 ENSRDENESRPPXEQARKSEEENPXSXDT 532
           +NS+   ES+ P E+AR+    NP S  T
Sbjct: 276 KNSKQSGESQSPWERAREKSASNPLSSPT 304


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = -3

Query: 230 RPPGSRWATCGRYRA----RPGPXGSRSAISTSVPAP----RTPPCAGTRAGSARACG 81
           + PGSRWA  G  +     RPGP  S +A   ++ AP    RT   + +   S+R  G
Sbjct: 171 KSPGSRWAARGAQQQQEDFRPGPRASSAANIDALFAPKSGSRTQSASSSSGPSSRMAG 228


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = -3

Query: 230 RPPGSRWATCGRYRA----RPGPXGSRSAISTSVPAP----RTPPCAGTRAGSARACG 81
           + PGSRWA  G  +     RPGP  S +A   ++ AP    RT   + +   S+R  G
Sbjct: 171 KSPGSRWAARGAQQQQEDFRPGPRASSAANIDALFAPKSGSRTQSASSSSGPSSRMAG 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,140
Number of Sequences: 27780
Number of extensions: 212022
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)