Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_D05_e516_07.seq
(1548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 168 1e-41
03_01_0290 + 2246791-2247027,2248089-2248346 168 1e-41
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 31 3.2
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.3
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 30 5.7
09_01_0142 - 2103224-2103864,2104264-2104399 29 7.5
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 29 7.5
01_06_1794 - 39919363-39920025 29 9.9
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 168 bits (408), Expect = 1e-41
Identities = 77/145 (53%), Positives = 107/145 (73%)
Frame = +3
Query: 138 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 317
LFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+TGRV+NVT A+G
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73
Query: 318 VIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPA 497
V +NK+V RI+ KRI++R+EHV+ S+C ++F R +N++L +AKA G+V++ KRQP
Sbjct: 74 VEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQ 133
Query: 498 PPKAAHIVSGAEKPVLLAPIPYEFV 572
PK +V GA + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 168 bits (408), Expect = 1e-41
Identities = 77/145 (53%), Positives = 106/145 (73%)
Frame = +3
Query: 138 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 317
LFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+TGRV+NVT A+G
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73
Query: 318 VIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPA 497
V +NK+V RI+ KRI++R+EHV+ S+C ++ R +N++L +AKA G+V++ KRQP
Sbjct: 74 VEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPE 133
Query: 498 PPKAAHIVSGAEKPVLLAPIPYEFV 572
PK +V GA + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 30.7 bits (66), Expect = 3.2
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 279 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 458
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 459 AAGKVVNLKRQPAP-PKAAHIVSGAEKPVLLAPI 557
+ +Q +P P + IVS + P +API
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAP-RIAPI 495
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 666 ITIHWPSFYNVV-TGKTLALPNLIALQH 746
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>07_01_0935 +
7905748-7905765,7906071-7906096,7906142-7906166,
7906891-7907700,7907803-7907934,7908102-7908470,
7908540-7908671,7909135-7909662
Length = 679
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 218 NDVSHFVHFHVRGKWNSSMCAESSGEQVPWY 126
+D+SH+++F+V G C +SG + WY
Sbjct: 308 SDLSHYLYFNVVGLITRHDCERTSGYAMSWY 338
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 260 VWHTLLYSAIAPN-VNDVSHFVHFHVRGKWNSSMCAESSGEQVPWY 126
VW + Y + +D SH+++F+V G C +SG + W+
Sbjct: 460 VWSSYDYCLLPDQRCSDFSHYLYFNVVGLITRHDCERTSGYAISWW 505
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 29.5 bits (63), Expect = 7.5
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 279 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 458
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 459 AAGKVVNLKRQPAP-PKAAHIVSGAEKPVLLAPI 557
+ + +Q +P P +VS + P +API
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAP-RIAPI 210
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 129 PGXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAH 308
PG + F T G IP Y+ G + + +G + G PHK+ R+Y++ +
Sbjct: 102 PGETWHMVFSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASS 148
Query: 309 ALG 317
ALG
Sbjct: 149 ALG 151
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.1 bits (62), Expect = 9.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 420 RVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPI 557
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,111,389
Number of Sequences: 37544
Number of extensions: 643032
Number of successful extensions: 1654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4988906440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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