Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D05_e516_07.seq
         (1548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.57 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.57
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 281  RACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQG 430
            R      + + ++ ++Q + +Q   +  Q  H+ARE   V AG+ +   G
Sbjct: 1203 RNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAG 1252



 Score = 22.6 bits (46), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 317  RDREQARPRQDPTETHQHPHR-----AREALQVQAGLPQARQGERKAVEG 451
            + ++Q + +Q P +  Q P +      ++  Q Q   PQ +Q E  AV G
Sbjct: 1506 QQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSG 1555


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 236 AIAPNVNDVSHFVHFHVRGKWNSSMCAESSGEQ 138
           +++P V + S  VH       NSS  +E S E+
Sbjct: 734 SLSPRVENRSAIVHSEASANANSSTSSEESREE 766


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,485
Number of Sequences: 438
Number of extensions: 6366
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54309750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)