Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_D04_e508_08.seq
(1574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.082
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.76
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 5.4
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 7.1
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.5 bits (73), Expect = 0.082
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Frame = +3
Query: 306 PTDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXX 485
P S+L S ST +TS S L T ++ + S S+ A+T
Sbjct: 983 PITSSSVLNS--STPITSSSVLNTSTPITSS--SVLNSSTAITSSTALNTSTPITSSSVL 1038
Query: 486 XKVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDW 659
P S+ +V+TST I + V+ T + ALN + S++ NS S P
Sbjct: 1039 NSSTPIT-SSTVVNTSTPITSSTVVNSSTPITSSTALNTST--PITSSSVLNS-STPIT- 1093
Query: 660 PSLILNSPTPMTAS 701
S +LNS TP+T+S
Sbjct: 1094 SSTVLNSSTPITSS 1107
Score = 31.5 bits (68), Expect = 0.33
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Frame = +3
Query: 306 PTDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXX 485
P S+L S ST +TS + L T ++ + S S+ +T
Sbjct: 2951 PITSSSVLNS--STPITSSTALNTSTSITSS--SVLNSSTPITSSTVVNTSTPITSSSVL 3006
Query: 486 XKVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDW 659
P S+ +V+TST I + V+ T + ALN + S+ NS S P
Sbjct: 3007 NSSTPIT-SSTVVNTSTPITSSTVVNSSTPITSSTALNTST--PITSSTVLNS-STPIT- 3061
Query: 660 PSLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S A S P+T
Sbjct: 3062 SSSVLNSSTPITSST---ALNTSTPIT 3085
Score = 30.7 bits (66), Expect = 0.58
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T L + P S+ + S + +T+ T L+ + P ++S +
Sbjct: 1780 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSS 1839
Query: 489 KVM---PPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPR 653
V+ P S+ ++TST I + ++ T + ALN + S++ NS S P
Sbjct: 1840 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTST--PITSSSVLNS-STPI 1896
Query: 654 DWPSLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S A S P+T
Sbjct: 1897 T-SSTVLNSSTPITSST---ALNTSTPIT 1921
Score = 30.3 bits (65), Expect = 0.76
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T + S ST +TS S L + T ++ + T++
Sbjct: 1126 TPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTP---ITSSTVVNSSTPITSSTVV 1182
Query: 489 KVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP 662
P S+ +V+TST I + V+ T + LN + S++ NS S P
Sbjct: 1183 NTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTST--PITSSSVLNS-STPIT-S 1238
Query: 663 SLILNSPTPMTAS 701
S ILNS TP+T+S
Sbjct: 1239 SSILNSSTPITSS 1251
Score = 29.9 bits (64), Expect = 1.0
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 2/146 (1%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T + S STS+TS S L + T ++ + T++ +T
Sbjct: 1294 TPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTST--PITSSSVLNSSTPITSSTVVN 1351
Query: 489 KVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP 662
P S+ +V+TST I + V+ T + +N + S+ NS S P
Sbjct: 1352 SSTPIT-SSTVVNTSTPITSSTVVNTSTPITSSTVVNSS--TPITSSTVLNS-STPIT-S 1406
Query: 663 SLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S S P+T
Sbjct: 1407 SSVLNSSTPITSSTVV---NTSTPIT 1429
Score = 29.9 bits (64), Expect = 1.0
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Frame = +3
Query: 330 PSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVM---P 500
P ST V S + +T+ T ++ + P +++ + V+
Sbjct: 1655 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSST 1714
Query: 501 PK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWPSLIL 674
P S+ +V+TST I + V+ T + +N P S A S + S +L
Sbjct: 1715 PITSSTVVNTSTPITSSTVVNSSTPITSSTVVNSST-PITSSTALNTSTPITS---SSVL 1770
Query: 675 NSPTPMTASVSTCA*TVSNPVT 740
NS TP+T+S A S P+T
Sbjct: 1771 NSSTPITSST---ALNTSTPIT 1789
Score = 29.9 bits (64), Expect = 1.0
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Frame = +3
Query: 315 LCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKV 494
L S P ST V S + +T+ + L+ + P +++A + V
Sbjct: 2130 LNSSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2189
Query: 495 M---PPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDW 659
+ P S+ +V+TST I + V+ T + +N + S+ NS S P
Sbjct: 2190 VNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSST--PITSSTVLNS-STPIT- 2245
Query: 660 PSLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S S P+T
Sbjct: 2246 SSSVLNSSTPITSSTVV---NTSTPIT 2269
Score = 29.9 bits (64), Expect = 1.0
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T + S STS+TS S L + T ++ + T++
Sbjct: 2866 TPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTP---ITSSSVLNSSTPITSSTVV 2922
Query: 489 KVMPPK*SAPLVSTSTNIPA--PVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP 662
P S+ +V++ST I + ++ T + LN P S A S S+
Sbjct: 2923 NTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLN-SSTPITSSTALNTSTSIT---S 2978
Query: 663 SLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S S P+T
Sbjct: 2979 SSVLNSSTPITSSTVV---NTSTPIT 3001
Score = 29.5 bits (63), Expect = 1.3
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T L S P S+ + S + +T+ T L+ + P ++S +
Sbjct: 604 TVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSS 663
Query: 489 KVMPPK*SAPLVSTST-NIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP- 662
+ S P+ S+S N P++ T L + S A +S ++ P
Sbjct: 664 TALNT--STPITSSSVLNSSTPITSSTALNTSTPITSSSVLNS-STAITSSTALNTSTPI 720
Query: 663 --SLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S A S P+T
Sbjct: 721 TSSSVLNSSTPITSST---ALNTSTPIT 745
Score = 29.5 bits (63), Expect = 1.3
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Frame = +3
Query: 306 PTDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXX 485
P S+L S ST +TS S L T ++ + S S+ +T
Sbjct: 1979 PITSSSVLNS--STPITSSSVLNTSTPITSS--SVLNSSTPITSSTVVNTSTPITSSTVV 2034
Query: 486 XKVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDW 659
P S+ ++TST I + ++ T + ALN + S++ NS S P
Sbjct: 2035 NSSTPIT-SSTALNTSTPITSSSVLNSSTPITSSTALNTST--PITSSSVLNS-STPIT- 2089
Query: 660 PSLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S A S P+T
Sbjct: 2090 SSTVLNSSTPITSST---ALNTSTPIT 2113
Score = 29.5 bits (63), Expect = 1.3
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Frame = +3
Query: 315 LCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKV 494
L S P ST V + + +T+ T ++ + P +++A + V
Sbjct: 3006 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSV 3065
Query: 495 MPPK*SAPLVS-TSTNIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWPSL- 668
+ S P+ S T+ N P++ + L A+ S+ P S S+ ++
Sbjct: 3066 LNS--STPITSSTALNTSTPITSSSVLNSSTAITSSSIVN--SSTPITSSSVLNSSTAIT 3121
Query: 669 ---ILNSPTPMTAS 701
ILNS TP+T+S
Sbjct: 3122 SSSILNSSTPITSS 3135
Score = 28.7 bits (61), Expect = 2.3
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Frame = +3
Query: 321 SILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVM- 497
S P S+ + S + +T+ T L+ + P ++S + V+
Sbjct: 848 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 907
Query: 498 --PPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWPS 665
P S+ ++TST I + ++ T + LN + S++ NS S P S
Sbjct: 908 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTST--PITSSSVLNS-STPIT-SS 963
Query: 666 LILNSPTPMTASVSTCA*TVSNPVT 740
+LNS TP+T+S A S P+T
Sbjct: 964 TVLNSSTPITSST---ALNTSTPIT 985
Score = 28.7 bits (61), Expect = 2.3
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 2/146 (1%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T + S ST +TS S L + T ++ + S S+ +T
Sbjct: 1522 TPITSSTVLNTSTPITSSSVLNSSTPITSS--SVLNSSTPITSSTVVNTSTPITSSSVVN 1579
Query: 489 KVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP 662
P S+ ++TST I + ++ T + ALN + S++ NS S P
Sbjct: 1580 SSTPIT-SSTALNTSTPITSSSVLNSSTPITSSTALNTST--PITSSSVLNS-STPIT-S 1634
Query: 663 SLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S A S P+T
Sbjct: 1635 STVLNSSTPITSST---ALNTSPPIT 1657
Score = 28.7 bits (61), Expect = 2.3
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Frame = +3
Query: 330 PSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVM---P 500
P ST V S + +T+ T L+ + P ++S + V+
Sbjct: 2219 PITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSST 2278
Query: 501 PK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKR----RPKMVSNAPKNSKSMPRD-- 656
P S+ +V+TST I + V+ T + ALN + S+ P S ++
Sbjct: 2279 PITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTST 2338
Query: 657 --WPSLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S S P+T
Sbjct: 2339 PITSSSVLNSSTPITSSTVV---NTSTPIT 2365
Score = 28.7 bits (61), Expect = 2.3
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Frame = +3
Query: 330 PSGKSTSVTSPSTLTAETGLSCNPP---SQTASAHAVTVXXXXXXXXXXXXXXXXXKVMP 500
P ST V S + +T+ T L+ + P S ++
Sbjct: 3023 PITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTST 3082
Query: 501 PK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWPSLIL 674
P S+ ++++ST I + V+ T + LN + S++ NS S P S IL
Sbjct: 3083 PITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTA--ITSSSILNS-STPIT-SSSIL 3138
Query: 675 NSPTPMTAS 701
NS TP+T+S
Sbjct: 3139 NSSTPITSS 3147
Score = 28.3 bits (60), Expect = 3.1
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Frame = +3
Query: 315 LCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKV 494
L S P S+ + S + +T+ T L+ + P ++S + V
Sbjct: 642 LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 701
Query: 495 MPPK*SAPLVSTSTNIPAPVSGP------TQLVDKVALNRKRRPKMVSNAPKNSKSMPRD 656
+ +A ST+ N P++ T + ALN + S++ NS S P
Sbjct: 702 LNSS-TAITSSTALNTSTPITSSSVLNSSTPITSSTALNTST--PITSSSVLNS-STPIT 757
Query: 657 WPSLILNSPTPMTAS 701
S ILNS TP+T+S
Sbjct: 758 -SSSILNSSTPITSS 771
Score = 27.9 bits (59), Expect = 4.1
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Frame = +3
Query: 330 PSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVM---P 500
P ST V S + +T+ T L+ + P ++S + V+
Sbjct: 2927 PITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSST 2986
Query: 501 PK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKR----RPKMVSNAP-KNSKSMPRDW 659
P S+ +V+TST I + ++ T + +N + S+ P +S ++
Sbjct: 2987 PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 3046
Query: 660 P---SLILNSPTPMTAS 701
P S +LNS TP+T+S
Sbjct: 3047 PITSSTVLNSSTPITSS 3063
Score = 27.5 bits (58), Expect = 5.4
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T L + P S+ + S + +T+ T L+ + P ++S +
Sbjct: 688 TALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSS 747
Query: 489 KVM---PPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPR 653
V+ P S+ ++++ST I + ++ T + +N + S++ NS S P
Sbjct: 748 SVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVLNS-STPI 804
Query: 654 DWPSLILNSPTPMTAS 701
S +LNS TP+T+S
Sbjct: 805 T-SSTVLNSSTPITSS 819
Score = 27.5 bits (58), Expect = 5.4
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Frame = +3
Query: 321 SILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMP 500
S P ST++ + + +T+ + L+ + P +++A + V+
Sbjct: 1844 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLN 1903
Query: 501 PK*SAPLVS-TSTNIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRD----WPS 665
S P+ S T+ N P++ + L + + S+ P S ++ S
Sbjct: 1904 S--STPITSSTALNTSTPITSSSVLNSSTPITSSS--VLNSSTPITSSTVVNSSTPITSS 1959
Query: 666 LILNSPTPMTASVSTCA*TVSNPVT 740
+LNS TP+T+S A S P+T
Sbjct: 1960 SVLNSSTPITSST---ALNTSTPIT 1981
Score = 27.5 bits (58), Expect = 5.4
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Frame = +3
Query: 321 SILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMP 500
S P ST++ + + +T+ + L+ + P +++A + V+
Sbjct: 2036 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLN 2095
Query: 501 PK*SAPLVS-TSTNIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRD----WPS 665
S P+ S T+ N P++ + L + + S+ P S ++ S
Sbjct: 2096 S--STPITSSTALNTSTPITSSSVLNSSTPITSSS--VLNSSTPITSSTVVNSSTPITSS 2151
Query: 666 LILNSPTPMTASVSTCA*TVSNPVT 740
+LNS TP+T+S A S P+T
Sbjct: 2152 SVLNSSTPITSST---ALNTSTPIT 2173
Score = 27.5 bits (58), Expect = 5.4
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Frame = +3
Query: 306 PTDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXX 485
P S+L S ST++TS S + + T ++ + S S+ A+T
Sbjct: 3083 PITSSSVLNS--STAITSSSIVNSSTPITSS--SVLNSSTAITSSSILNSSTPITSSSIL 3138
Query: 486 XKVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDW 659
P S+ +V++ST I + ++ T + LN + S++ NS S P
Sbjct: 3139 NSSTPIT-SSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTA--ITSSSIVNS-STPIT- 3193
Query: 660 PSLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S + S P+T
Sbjct: 3194 SSSVLNSSTPITSSTTL---NTSTPIT 3217
Score = 26.6 bits (56), Expect = 9.4
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTL------TAETGLSCNPPSQTASAHAVTVXXXXXXXXXXX 470
T + S STS+TS S L T+ T ++ + P ++S +
Sbjct: 526 TPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTS 585
Query: 471 XXXXXXKVM---PPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKN 635
V+ P S+ ++++ST I + ++ T + ALN + S++ N
Sbjct: 586 TPITRYSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTS--TPITSSSVLN 643
Query: 636 SKSMPRDWPSLILNSPTPMTASVSTCA*TVSNPVT 740
S S P S +LNS TP+T+S A S P+T
Sbjct: 644 S-STPIT-SSSVLNSSTPITSST---ALNTSTPIT 673
Score = 26.6 bits (56), Expect = 9.4
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T + S STS+TS S L + T ++ + S S+ +T
Sbjct: 2410 TPITSSTVVNTSTSITSSSVLNSSTPITSS--SVLNSSTPITSSTVVNSSTPITSSSVLN 2467
Query: 489 KVMPPK*SAPLVSTSTNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP 662
P S+ ++TST I + ++ T + +N + S+ NS S P
Sbjct: 2468 SSTPIT-SSTALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNS-STPIT-S 2522
Query: 663 SLILNSPTPMTAS 701
S +LNS TP+T+S
Sbjct: 2523 STVLNSSTPITSS 2535
Score = 26.6 bits (56), Expect = 9.4
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 2/146 (1%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXX 488
T + S STS+TS S L + T ++ + T++
Sbjct: 2638 TPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTP---ITSSSVLNSSTPITSSTVV 2694
Query: 489 KVMPPK*SAPLVSTSTNIPA--PVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWP 662
P S+ +V++ST I + ++ T + LN P S S +
Sbjct: 2695 NTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLN-SSTPITSSTVVNTSTPIT---S 2750
Query: 663 SLILNSPTPMTASVSTCA*TVSNPVT 740
S +LNS TP+T+S S P+T
Sbjct: 2751 SSVLNSSTPITSSTVV---NTSTPIT 2773
Score = 26.6 bits (56), Expect = 9.4
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Frame = +3
Query: 315 LCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKV 494
L S P S+ + S + +T+ T ++ + P ++S + V
Sbjct: 3234 LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 3293
Query: 495 MPPK*SAPLVSTST-NIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNS--KSMPRDWPS 665
+ S P+ S++T N P++ + L A+ + +S S S
Sbjct: 3294 VNS--STPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS 3351
Query: 666 LILNSPTPMTAS 701
ILNS TP+T+S
Sbjct: 3352 SILNSSTPVTSS 3363
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.76
Identities = 35/136 (25%), Positives = 48/136 (35%)
Frame = +3
Query: 333 SGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK*S 512
S STS+ P T T+ T + N P T S T +P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSN-PLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP---- 196
Query: 513 APLVSTSTNIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWPSLILNSPTPM 692
P ++ST+IP P PT N P S + S S+P S + TP
Sbjct: 197 -PTSTSSTSIPIP---PTS-TSSTDTNSSPLP-TTSTSCTTSTSIPTGGSSSLSTPITPT 250
Query: 693 TASVSTCA*TVSNPVT 740
ST + ++ P T
Sbjct: 251 VPPTSTSSTSIPIPPT 266
Score = 26.6 bits (56), Expect = 9.4
Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 12/156 (7%)
Frame = +3
Query: 309 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPP-----SQTASAHAVTVXXXXXXXXXXXX 473
T SI P+G ST+ +P+ T + PP S T ++ +
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSI 345
Query: 474 XXXXXKVMPPK*SAPLVST-STNIPAP--VSGPTQLVDKVALNRKRRPKMVSNAPKNSKS 644
P + P ST ST+ P P + T L+ ++ P S
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Query: 645 MPRDWPSL-ILNSPTPMT---ASVSTCA*TVSNPVT 740
P++ +S TP+T + ST S PVT
Sbjct: 406 TTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVT 441
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 570 AESGQTQVPEYSSKWRPAVHFTSVASPSMQ 481
A+ + VP++ WR +H S+A+ S Q
Sbjct: 619 ADDEEEDVPDHQPSWRGRIHSFSIATDSSQ 648
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 600 RRPKMVSNAPKNSKSMPRDWPSLILNSPTPMTASVSTCA*TVSN--PVTLGA 749
R P +++ P NS S+ PS+ +S TP +S+ +VSN P LG+
Sbjct: 104 RPPTRLTSTPSNSSSL----PSIPSSSSTPSISSIPHTTSSVSNDIPSVLGS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,786,301
Number of Sequences: 5004
Number of extensions: 90979
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 888013952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -