Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D04_e508_08.seq
         (1574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521...    33   0.47 
07_01_1054 + 9250298-9250428,9250889-9251489                           31   3.3  
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567...    30   5.8  
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555...    30   5.8  
06_03_0336 + 19671500-19672150,19672681-19673301                       29   7.6  
04_04_0869 - 28883688-28884983                                         29   7.6  

>03_02_0039 -
           5213699-5214775,5214815-5215093,5215300-5215776,
           5216073-5216438
          Length = 732

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
 Frame = +3

Query: 342 STSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXK----VMPP-K 506
           +T+ T      A++  +  P S  A+A  VT                  K    V PP +
Sbjct: 221 ATTATKGVATDADSTTTTTPSSSAATAGGVTTTATTTMTTAIEGQAVVVKHGEAVTPPSR 280

Query: 507 *SAPLVSTSTNIPAPVSGPTQLVDKVALNRKRRPKMVSNAPKNSKSMPRDWPSLILNSPT 686
             A    T  +   P+SG   +V  VA         ++ A     ++  DW +L + SP 
Sbjct: 281 QDATKNITDVHKHQPLSGEHAIVAPVADFNS----FLAKAHNLDAALQIDWTALQIGSPA 336

Query: 687 PMTASV 704
           P+TASV
Sbjct: 337 PLTASV 342


>07_01_1054 + 9250298-9250428,9250889-9251489
          Length = 243

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 526 ETSGALHFGGITFDAVEEDVADR--RVGVSEETVTAWALAVWLG 401
           E  G LH  G+    VE+   D    VG+ E+ V AW+   W G
Sbjct: 112 EVGGGLHRSGVADSKVEDGRRDAGVEVGMQEKVVQAWSGRRWRG 155


>03_02_0109 +
           5671418-5671631,5675610-5675690,5676249-5676340,
           5676433-5676513,5676594-5676691,5676872-5676953,
           5677050-5677088
          Length = 228

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 676 FRMSDGQSLGIDLLFFGAFETIFGLLFLFNATL 578
           F M+D + +G+ L  FG F +  G++F F+  L
Sbjct: 92  FEMNDLKKIGLGLTGFGVFFSFLGIIFFFDKGL 124


>01_06_1658 -
           38954953-38955145,38955310-38955368,38955541-38955587,
           38956264-38956294,38956507-38956569,38956760-38956855,
           38956939-38957022,38957112-38957204,38957505-38957582,
           38957938-38958028,38958108-38958208,38958303-38959121,
           38959216-38959266
          Length = 601

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 420 HWLFGLGGCSSVLSPQSTLK 361
           +WLF  GG S  LSP+STL+
Sbjct: 327 YWLFAYGGYSGDLSPESTLE 346


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 281 GVATTKICPDGLVFDPTIRKINKCDQPFNVDCGD 382
           G A   +C + +V   T+R++  C   F+VDC D
Sbjct: 144 GGALCAVCLEDVVAGETVRRLPSCGHLFHVDCID 177


>04_04_0869 - 28883688-28884983
          Length = 431

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 757 PNLAPKVTGFDTVQAHVETLAVIGVGEFRMS 665
           P  APK +   T++ H++TLA  G G++ +S
Sbjct: 255 PQYAPKAS-LKTIKGHIQTLASTGAGKYDLS 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,270,647
Number of Sequences: 37544
Number of extensions: 766680
Number of successful extensions: 2177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2177
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5093325412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)