Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D04_e508_08.seq
         (1574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    26   1.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    26   1.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    26   1.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   3.1  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 DKFYECVDGVATT--KICPDGLVFDPTIRKINKCDQPFNVDCGDRTE 391
           DKFY+C+   A T        + F+    K  K + P    CG+RTE
Sbjct: 93  DKFYDCLKNSADTISSYFVGKMYFNLIDTKCYKLEHPV-TGCGERTE 138


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 DKFYECVDGVATT--KICPDGLVFDPTIRKINKCDQPFNVDCGDRTE 391
           DKFY+C+   A T        + F+    K  K + P    CG+RTE
Sbjct: 98  DKFYDCLKNSADTISSYFVGKMYFNLIDTKCYKLEHPV-TGCGERTE 143


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 DKFYECVDGVATT--KICPDGLVFDPTIRKINKCDQPFNVDCGDRTE 391
           DKFY+C+   A T        + F+    K  K + P    CG+RTE
Sbjct: 98  DKFYDCLKNSADTISSYFVGKMYFNLIDTKCYKLEHPV-TGCGERTE 143


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 570 AESGQTQVPEYSSKWRPAVHFTSVASP 490
           AES  +  P++  ++ P+ H   ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,775
Number of Sequences: 438
Number of extensions: 7607
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55386375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)