Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D04_e508_08.seq
         (1574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    33   0.68 
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim...    31   2.1  
At5g01430.1 68418.m00056 Got1-like family protein contains Pfam ...    31   2.8  
At3g49420.1 68416.m05402 Got1-like family protein contains Pfam ...    31   2.8  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    31   2.8  
At1g79750.1 68414.m09304 malate oxidoreductase, putative similar...    30   4.8  
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    29   6.4  
At3g03180.1 68416.m00314 Got1-like family protein contains Pfam ...    29   6.4  
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    29   6.4  
At5g35230.1 68418.m04177 hypothetical protein                          29   8.4  

>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
            extensin family protein contains similarity to disease
            resistance protein GI:3894383 from [Lycopersicon
            esculentum]; contains leucine-rich repeats, Pfam:PF00560;
            contains proline rich extensin domains,
            INTERPRO:IPR002965
          Length = 847

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 1/130 (0%)
 Frame = +3

Query: 303  APTDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXX 482
            APT + S  PS + T V +PS+  +    + +P        A T                
Sbjct: 686  APTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESN 745

Query: 483  XXKVMPPK*SAPLVSTSTNIPAPVSGPTQLVDKVAL-NRKRRPKMVSNAPKNSKSMPRDW 659
                  P      V   T    PV  PT   + V+   +    +     P N  S+P   
Sbjct: 746  QSPSQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSS 805

Query: 660  PSLILNSPTP 689
            PS   + P P
Sbjct: 806  PSTDTSIPPP 815


>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222; identical to vacuolar sorting
           receptor-like protein (GI:2827665) [Arabidopsis
           thaliana]
          Length = 625

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 221 NKDGQYEDERQCDKFYECVDGVATTKICPDGLVFDP-TIRKINKCDQPFNVDC 376
           N  G + D R    F  C D V+T   CP+G   D  T   IN+C +     C
Sbjct: 474 NNGGCWSDTRNGLTFSACSDSVSTGCKCPEGFQGDGLTCEDINECKERSVCQC 526


>At5g01430.1 68418.m00056 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 676 FRMSDGQSLGIDLLFFGAFETIFGLLFLFNATL 578
           F M+D + +G+ L  FG F +  G++F+F+  L
Sbjct: 4   FEMNDRKKIGLGLTGFGVFFSFLGIVFVFDKGL 36


>At3g49420.1 68416.m05402 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 676 FRMSDGQSLGIDLLFFGAFETIFGLLFLFNATL 578
           F M+D + +G+ L  FG F +  G++F+F+  L
Sbjct: 4   FEMNDRKKIGLGLTGFGVFFSFLGIVFVFDKGL 36


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
 Frame = +3

Query: 342 STSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK*SAPL 521
           ST+   PS   AE   S  PP  +     VT                  +  PP  SAPL
Sbjct: 312 STAPPRPSVTAAEPMNSAAPPRPS-----VTAAEPMNSTAPPRPSVTAAEATPPNLSAPL 366

Query: 522 VSTSTNIPAPVSGPTQLVDKVALNRKR--RPKMVSNA-----PKNSKSMPRDWPSLIL-N 677
              +T  P+P+S    +     +      RP + + A     P ++ S PR  P   L  
Sbjct: 367 PHCNTPQPSPISQQAAVESNTQMQSTALPRPSVTAEARPLHQPHSNTSQPRPIPQQALAQ 426

Query: 678 SPTPMTAS 701
           S T +T++
Sbjct: 427 SNTNITST 434


>At1g79750.1 68414.m09304 malate oxidoreductase, putative similar to
           malate oxidoreductase (NADP-dependent malic enzyme)
           GB:P34105 (Populus balsamifera subsp. trichocarpa)
          Length = 646

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 399 GCSSVLS---PQSTLKGWSHLLIFLMVGSNTSPSGQILVVAT 283
           GCS+ LS   P++ +   + L +F  +GSN  P+G +L+  T
Sbjct: 17  GCSTRLSLRQPRTIITPPASLRVFSSLGSNQDPTGSVLIETT 58


>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 651 WASTCCSLGHSKPSLVFFSCST 586
           W+  C   G +KP+  F+SCST
Sbjct: 78  WSCFCALCGETKPAKYFYSCST 99


>At3g03180.1 68416.m00314 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 685 VGEFRMSDGQSLGIDLLFFGAFETIFGLLFLFNATL 578
           +    M+D + +G+ L  FG F T  G++F+F+  L
Sbjct: 1   MASLEMNDLKKIGLGLTGFGVFFTFLGVIFVFDKGL 36


>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 278 DG-VATTKICPDGLVFDPTIRKINKCDQPFNVDC 376
           DG V   K C  G VFD    K NKCD  F+V+C
Sbjct: 134 DGFVQLCKTCKWG-VFDAVHYKCNKCDLRFHVEC 166


>At5g35230.1 68418.m04177 hypothetical protein 
          Length = 366

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 823 QSSHPRTVSGASHFWLSSL*TSPNLAPKVTGFDTVQAHVETLAVIGVGEFRMSDGQSLG 647
           +S HP  V    H +  +L  +P  A  +  ++     VET AV G G  R  +G S G
Sbjct: 41  RSQHPMAVHYKLHRY--TLVNTPERALYILSYERPAGVVETEAVFGAGRRRRREGASRG 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,853,394
Number of Sequences: 28952
Number of extensions: 554231
Number of successful extensions: 1556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4240980480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)