Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D03_e500_07.seq
         (1571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   232   6e-61
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   229   6e-60

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  232 bits (567), Expect = 6e-61
 Identities = 112/179 (62%), Positives = 128/179 (71%)
 Frame = +1

Query: 133 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRXSNKDVT 312
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 313 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 492
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119

Query: 493 ATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPHSIKRF 669
             E TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA DGGL++PHS KRF
Sbjct: 120 NVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 177


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  229 bits (559), Expect = 6e-60
 Identities = 111/179 (62%), Positives = 127/179 (70%)
 Frame = +1

Query: 133 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRXSNKDVT 312
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 313 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 492
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119

Query: 493 ATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPHSIKRF 669
             E TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA DGGL++PHS KRF
Sbjct: 120 NIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,297,733
Number of Sequences: 37544
Number of extensions: 496118
Number of successful extensions: 1122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5081723304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)