Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D03_e500_07.seq
         (1571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             180   3e-45
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         174   1e-43
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   30   5.8  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  180 bits (438), Expect = 3e-45
 Identities = 106/240 (44%), Positives = 135/240 (56%), Gaps = 37/240 (15%)
 Frame = +1

Query: 193 RRREGKTDYYARKRL------------------------VVQDKNKYNTP------KYRL 282
           RR +GKTDYYARKRL                        + Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 283 IVRXS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXX 441
             R   NK          ++AY++++GD ++ +AY+HELP +G+KVGLTNYAAAYCTG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 442 XXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 621
                        +YTG  +V GDEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196

Query: 622 GAXDGGLNVPHSIKRFPWI*C*I*EILMXKYIXHTSLDYLWQSTCVPLXXEDEXSFQRQF 801
           GA DGGL +PHS+KRFP       +     +  H    ++       L  EDE S++RQF
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHV-AEYMRSLAEEDEESYKRQF 255



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +3

Query: 693 RNFNAXVHXAHIFGLPVAEYMRTLAXXRRXFFPETVWXSXFKNRXKSXMIFEXNFXKXHE 872
           ++F+A VH  HIFG  VAEYMR+LA      + +  + +  KN   +  I E  +   H+
Sbjct: 220 KDFSAEVHRNHIFGKHVAEYMRSLAEEDEESY-KRQFSAYIKNGVDADSI-EGIYKAAHQ 277

Query: 873 XXSXXPXPXKXDKRRI 920
                P   K +K+ +
Sbjct: 278 AIRADPVHKKAEKKDV 293


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  174 bits (424), Expect = 1e-43
 Identities = 75/112 (66%), Positives = 88/112 (78%)
 Frame = +1

Query: 319 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGAT 498
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG               +YTG  
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 499 EVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPH 654
           EV GDEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGA DGGL +PH
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112


>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -3

Query: 576 AYIQVTSECSWAIVNWFNIIFITSDF---SGTCV-ETVQAEPLQQSSCQQQTSAVGSSIV 409
           A +Q TS   WA+  WF    +T  F   SGT V   V+ E +Q S        VG  + 
Sbjct: 132 AQVQDTSRFVWALPGWFGNSEVTRHFRGDSGTSVLIRVKGERVQVSRSSSHGGRVG-GVS 190

Query: 408 SQTHLD 391
             TH D
Sbjct: 191 RSTHRD 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,331,720
Number of Sequences: 59808
Number of extensions: 582158
Number of successful extensions: 1272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5141146326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)