Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D03_e500_07.seq
         (1571 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   324   4e-90
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   7.8  
AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           25   7.8  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  324 bits (796), Expect = 4e-90
 Identities = 155/229 (67%), Positives = 175/229 (76%)
 Frame = +1

Query: 130 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRXSNKDV 309
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRL+ QDKNKYNTPK+RLIVR SN+D+
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 310 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 489
           TCQ+AY RIEGD IVCAAYSHELPRYG+KVGLTNYAAAYCTG             D+LY 
Sbjct: 61  TCQIAYRRIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYA 120

Query: 490 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPHSIKRF 669
           G T+VTG+EY VEPVD GP AFRCYLDVGLARTTTG+RVFGAMKGA DGGLN+PHS+KRF
Sbjct: 121 GCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRF 180

Query: 670 PWI*C*I*EILMXKYIXHTSLDYLWQSTCVPLXXEDEXSFQRQFGKVXS 816
           P             +  H    ++  +    L  EDE +F+RQF K  S
Sbjct: 181 PGYSAENKSFNAEMHRDHIFGLHV-ANYMRTLEEEDEEAFKRQFSKYIS 228



 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +3

Query: 693 RNFNAXVHXAHIFGLPVAEYMRTL 764
           ++FNA +H  HIFGL VA YMRTL
Sbjct: 188 KSFNAEMHRDHIFGLHVANYMRTL 211


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 490  GATEVTGDEYNVEPVDNGPG 549
            G T+ +GD+  ++  DNG G
Sbjct: 2011 GGTDASGDDLEIDACDNGCG 2030


>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = -1

Query: 665 LLIECGTFKPPSXAPFMAPNTRAPVVVRAKPTSK*HLN-------APGPLSTGSTLYSSP 507
           L +  G   PP+     A  T AP      PT+   +        APG  +T +T+ S P
Sbjct: 15  LAVTSGQIDPPTTTVAPATTTVAPTTTTVAPTTTTTVAPTTTTTVAPGQTTT-TTVASGP 73

Query: 506 VTSVAPV*RLSKPSLCNNLLASNRPV 429
           VT+       +  S   ++ A+  PV
Sbjct: 74  VTTTGSTDTTTPSSAPQDVKAALVPV 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,058,462
Number of Sequences: 2352
Number of extensions: 18695
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 68
effective length of database: 404,043
effective search space used: 183839565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)