Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D03_e500_07.seq
         (1571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   259   4e-69
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   9.0  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   9.0  
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    29   9.0  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  259 bits (634), Expect = 4e-69
 Identities = 120/180 (66%), Positives = 138/180 (76%)
 Frame = +1

Query: 130 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRXSNKDV 309
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR +NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 310 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 489
             Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG             DS Y 
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120

Query: 490 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPHSIKRF 669
           G  E+TG++YNVE  +     F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF
Sbjct: 121 GHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRF 179


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 338 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 442
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 338 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 442
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 109 ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 222
           I  IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,067,721
Number of Sequences: 27780
Number of extensions: 425371
Number of successful extensions: 939
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4545957324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)