Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D03_e500_07.seq
         (1571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.77 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.77 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    25   2.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   4.1  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 151 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 276
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 151 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 276
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 334 CVSMQLDR*HLYWIXVQSVGTLECCICFYPGQRGVCEHSSQFFP 203
           C S+ L   +L+W+ V   GT      ++P   G  EH S+FFP
Sbjct: 29  CTSLNLS--NLFWLFV---GT------YFPSLIGANEHYSKFFP 61


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 700 KFLRFSIISRGTS**-NVEHLNLHXRRPSWHQI 605
           K+L F++I  G S    +  LN+H R+PS H++
Sbjct: 300 KYLLFTMILVGLSVVITIVILNVHYRKPSTHKM 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,772
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55266750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)