Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_D03_e500_07.seq
         (1571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   230   2e-60
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   229   4e-60
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                29   8.4  
At2g29800.1 68415.m03620 kelch repeat-containing F-box family pr...    29   8.4  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  230 bits (562), Expect = 2e-60
 Identities = 108/180 (60%), Positives = 130/180 (72%)
 Frame = +1

Query: 130 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRXSNKDV 309
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 310 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 489
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 490 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPHSIKRF 669
           G  E TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA DGGL++PHS KRF
Sbjct: 121 GNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 179


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  229 bits (560), Expect = 4e-60
 Identities = 108/180 (60%), Positives = 130/180 (72%)
 Frame = +1

Query: 130 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRXSNKDV 309
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 310 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 489
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 490 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAXDGGLNVPHSIKRF 669
           G  E TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA DGGL++PHS KRF
Sbjct: 121 GNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 179


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = -1

Query: 638 PPSXAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAP 489
           PP+  P  AP T  P  V   PTS    +AP P S   T  +SP     P
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSSDAPT--ASPPAPEGP 86


>At2g29800.1 68415.m03620 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 414

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 558 MLLGCRLSTYHYWRSRIWCHE 620
           ++LGC  S++ Y+R  +WC E
Sbjct: 356 VILGCYRSSFDYYRKDVWCVE 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,792
Number of Sequences: 28952
Number of extensions: 384713
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4231341888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)