Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_D02_e492_08.seq
(1532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 40 0.001
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 31 0.56
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 3.9
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 27 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 9.1
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 9.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 9.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 9.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 9.1
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +2
Query: 98 GLYIFARANLFRNCFELQPTFNQLIERPLQLELVPGERYPAQRRNDAAVPEALILSITDM 277
GLY+ +LFR+ L+ +N++ + P +L L GE YP+ + ++V I ++
Sbjct: 1210 GLYVLCNRDLFRSTRGLEKLWNEIEKTPDKLLLTTGEIYPSSHKIGSSVE---TFEIENL 1266
Query: 278 PHMARYVYDL 307
H++ YV ++
Sbjct: 1267 LHLSNYVVEM 1276
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 30.7 bits (66), Expect = 0.56
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 389 SRSQQPDRLVPT-HPGATDGQDSDDEESAIPSTSSFQPTHI 508
SR+ P + T AT+G+D DDE+ + STS+ PT+I
Sbjct: 104 SRTMAPQHTILTPRLSATEGKD-DDEDELVISTSNTAPTYI 143
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 143 ELQPTFNQLIERPLQLELVPGERYPAQRRNDAAVPEALILSITDMPHM 286
+L+ +++IER +++ VPG R P+ R A E + + + D P +
Sbjct: 155 KLEDERHRIIERAMKM--VPGFRAPSDYRRPAKTQEKVYVPVKDYPEI 200
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 849 TKILTLTIFHSPFRLRNCWEGRSVRASSLLRQLAKGG 739
T L T+F +P N W +++R LA GG
Sbjct: 49 TNSLLQTLFQTPLPNANIWSNQAIRILMAFNILANGG 85
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 250 GIDIEYNRYAAYG--ALRLRPLLGKGSGLHQTVRKFPE-FVVRPRVCESITFAAARP 411
GID+ YN ++AYG ++PL+ + +++ ++ P +V+R R+ + + A+ P
Sbjct: 1728 GIDLCYNMHSAYGNWIPGMKPLIQQ--SMNKIMKANPALYVLRERIRKGLQLYASEP 1782
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 389 SRSQQPDRLVPTHPGATDGQDSDDEESAIPSTSSFQPTHIVNEIDE 526
S+ Q + +H G DG+ ++EE+ + S+S+ + + E+ +
Sbjct: 285 SKGLQIETQPASHDGEVDGEVKEEEENKVSSSSNIEASQSSLEVKD 330
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 461 EESAIPSTSSFQPTHIVNEIDEPP 532
E+ P TS QPTH +NE P
Sbjct: 214 EDECHPPTSDMQPTHELNESPSTP 237
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 633 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 797
P P+ S ++ H + + +L N I+L ++PLSP A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231
Query: 798 SCA 806
S A
Sbjct: 232 SDA 234
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 740 PPFASWRNSEEARTDRPSQQLRSLN 814
PP AS RN E + PS+Q S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,321,635
Number of Sequences: 5004
Number of extensions: 75527
Number of successful extensions: 291
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 860263516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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